Pre_GI: BLASTP Hits

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Query: NC_007951:1042291:1064075 Burkholderia xenovorans LB400 chromosome 1, complete sequence

Start: 1064075, End: 1064851, Length: 777

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009831:4539952:454054845405484541321774Shewanella sediminis HAW-EB3, complete genomecobalamin 5'-phosphate synthase2e-38159
NC_010506:4951500:495452049545204955293774Shewanella woodyi ATCC 51908, complete genomecobalamin 5'-phosphate synthase3e-37155
NC_012969:142000:161076161076161837762Methylovorus glucosetrophus SIP3-4 chromosome, complete genomecobalamin 5'-phosphate synthase1e-34146
NC_008321:977500:998408998408999196789Shewanella sp. MR-4, complete genomecobalamin 5'-phosphate synthase6e-34144
NC_015497:3794000:381461038146103815419810Glaciecola agarilytica 4H-3-7+YE-5 chromosome, complete genomecobalamin 5'-phosphate synthase1e-31136
NC_007481:3167434:318663331866333187457825Pseudoalteromonas haloplanktis TAC125 chromosome I, completecobalamin 5'-phosphate synthase6e-29127
NC_003228:2929006:293420229342022934945744Bacteroides fragilis NCTC 9343, complete genomeputative cobalamin 5'-phosphate synthase3e-2098.6
NC_016776:2913966:291916229191622919905744Bacteroides fragilis 638R, complete genomeputative cobalamin 5'-phosphate synthase1e-1996.7
NC_011894:3885490:388549038854903886362873Methylobacterium nodulans ORS 2060, complete genomecobalamin 5'-phosphate synthase1e-1790.5
NC_012491:1263469:126851212685121269252741Brevibacillus brevis NBRC 100599, complete genomecobalamin (5'-phosphate) synthase3e-1788.6
NC_021171:415771:435245435245435985741Bacillus sp. 1NLA3E, complete genomecobalamin (5'-phosphate) synthase2e-1686.3
NC_014632:567289:578648578648579397750Ilyobacter polytropus DSM 2926 chromosome, complete genomecobalamin-5'-phosphate synthase3e-1685.5
NC_012967:1967675:200247920024792003222744Escherichia coli B str. REL606 chromosome, complete genomecobalamin synthase4e-1685.5
NC_012947:1769438:176943817694381770181744Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completecobalamin synthase4e-1685.5
NC_009800:2083465:210308121030812103824744Escherichia coli HS, complete genomecobalamin 5'-phosphate synthase4e-1685.1
AP010958:2455052:245956624595662460309744Escherichia coli O103:H2 str. 12009 DNA, complete genomecobalamin 5'-phosphate synthase4e-1685.1
NC_013353:2455052:245956624595662460309744Escherichia coli O103:H2 str. 12009, complete genomecobalamin 5'-phosphate synthase4e-1685.1
NC_016822:2201388:224259522425952243338744Shigella sonnei 53G, complete genomecobalamin synthase4e-1685.1
AC_000091:2027648:206661620666162067359744Escherichia coli W3110 DNA, complete genomecobalamin 5'-phosphate synthase4e-1685.1
NC_010473:2119480:215351121535112154254744Escherichia coli str. K-12 substr. DH10B, complete genomecobalamin 5'-phosphate synthase4e-1685.1
NC_000913:2042935:206250320625032063246744Escherichia coli K12, complete genomecobalamin synthase4e-1685.1
NC_011745:2209288:227152022715202272263744Escherichia coli ED1a chromosome, complete genomecobalamin synthase4e-1685.1
NC_012759:1920955:195498619549861955729744Escherichia coli BW2952 chromosome, complete genomecobalamin synthase4e-1685.1
NC_011601:2139188:217951421795142180257744Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomecobalamin synthase6e-1684.7
NC_017068:1327025:132803813280381328793756Selenomonas ruminantium subsp. lactilytica TAM6421, completeputative cobalamin 5'-phosphate synthase6e-1684.7
NC_007946:2155454:217053221705322171311780Escherichia coli UTI89, complete genomecobalamin 5'-phosphate synthase / cobalamin synthase7e-1684.3
NC_004431:2304280:231936723193672320146780Escherichia coli CFT073, complete genomecobalamin synthase7e-1684.3
CP002797:2062006:206546920654692066212744Escherichia coli NA114, complete genomeCobalamin synthase1e-1584
NC_008253:2056734:207184420718442072587744Escherichia coli 536, complete genomecobalamin [5'-phosphate] synthase1e-1584
NC_010468:1816359:181690118169011817644744Escherichia coli ATCC 8739, complete genomecobalamin 5'-phosphate synthase2e-1582.8
NC_015663:4950000:495002249500224950762741Enterobacter aerogenes KCTC 2190 chromosome, complete genomecobalamin synthase1e-1480.5
NC_011989:1638261:165857716585771659356780Agrobacterium vitis S4 chromosome 1, complete sequencecobalamin synthase9e-1580.5
NC_013892:853366:853366853366854124759Xenorhabdus bovienii SS-2004 chromosome, complete genomecobalamin 5'-phosphate synthase1e-1480.1
NC_011094:2061000:207792920779292078672744Salmonella enterica subsp. enterica serovar Schwarzengrund strcobalamin synthase1e-1376.6
NC_004631:948054:948054948054948797744Salmonella enterica subsp. enterica serovar Typhi Ty2, completecobalamin synthase2e-1375.9
NC_012488:1159463:116075811607581161504747Listeria monocytogenes Clip81459, complete genomecobalamin (5'-phosphatase) synthetase3e-1375.5
NC_016148:141011:156052156052156792741Thermovirga lienii DSM 17291 chromosome, complete genomecobalamin 5'-phosphate synthase3e-1375.5
NC_013766:1202713:120271312027131203459747Listeria monocytogenes 08-5578 chromosome, complete genomehypothetical protein2e-1273.2
NC_003030:1510000:152632615263261527084759Clostridium acetobutylicum ATCC 824, complete genomecobalamin synthase2e-1273.2
NC_015687:1508664:152792715279271528685759Clostridium acetobutylicum DSM 1731 chromosome, complete genomecobalamin synthase2e-1273.2
NC_017295:1507956:152574015257401526498759Clostridium acetobutylicum EA 2018 chromosome, complete genomecobalamin synthase2e-1273.2
NC_011149:2040396:205624120562412056963723Salmonella enterica subsp. enterica serovar Agona str. SL483,cobalamin 5'-phosphate synthase2e-1273.2
NC_016832:948029:948029948029948751723Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Cobalamin synthase2e-1273.2
NC_010162:9641549:964154996415499642316768Sorangium cellulosum 'So ce 56', complete genomecobalamin synthase2e-1169.7
NC_014483:1376500:138773413877341388603870Paenibacillus polymyxa E681 chromosome, complete genomeCobalamin synthase1e-1067.4
NC_016641:3173250:318504931850493185915867Paenibacillus terrae HPL-003 chromosome, complete genomecobalamin synthase9e-1167.4
NC_016751:1700164:171404017140401714780741Marinitoga piezophila KA3 chromosome, complete genomecobalamin 5''-phosphate synthase/cobalamin synthase9e-1167.4
NC_015437:1038476:104171310417131042540828Selenomonas sputigena ATCC 35185 chromosome, complete genomeCobalamin synthase1e-1067
NC_012962:1827000:184286118428611843607747Photorhabdus asymbiotica, complete genomecobalamin synthase1e-1067
NC_020291:1593143:160448316044831605238756Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomecobalamin synthase CobS3e-1065.9
NC_009617:1487110:149826314982631499021759Clostridium beijerinckii NCIMB 8052 chromosome, complete genomecobalamin-5-phosphate synthase CobS3e-1065.5
NC_009253:2927802:293128329312832932032750Desulfotomaculum reducens MI-1 chromosome, complete genomecobalamin 5'-phosphate synthase1e-0963.9
NC_013517:1055854:108700010870001087728729Sebaldella termitidis ATCC 33386, complete genomecobalamin 5'-phosphate synthase1e-0963.5
NC_007643:791500:791573791573792358786Rhodospirillum rubrum ATCC 11170, complete genomeCobalamin-5-phosphate synthase CobS1e-0963.5
NC_014622:1514416:152548615254861526355870Paenibacillus polymyxa SC2 chromosome, complete genomecobalamin synthase3e-0962.4
NC_015565:624298:642658642658643407750Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completecobalamin synthase8e-0857.8
NC_005126:3485330:348739834873983488144747Photorhabdus luminescens subsp. laumondii TTO1, complete genomecobalamin synthase6e-0754.7
NC_010475:2896000:290443329044332905221789Synechococcus sp. PCC 7002, complete genomecobalamin synthase1e-0653.9
NC_013854:2714033:273312227331222733970849Azospirillum sp. B510, complete genomecobalamin synthase1e-0653.9
NC_011296:1151346:115281211528121153594783Thermodesulfovibrio yellowstonii DSM 11347, complete genomecobalamin 5'-phosphate synthase3e-0652.8
NC_014844:762794:763861763861764598738Desulfovibrio aespoeensis Aspo-2 chromosome, complete genomecobalamin-5-phosphate synthase CobS4e-0652