Pre_GI Gene

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Host: NC_010475 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_010475:2896000 Synechococcus sp. PCC 7002, complete genome

Host Lineage: Synechococcus; Synechococcus; Synechococcaceae; Chroococcales; Cyanobacteria; Bacteria

General Information: The cyanobacterium Synechococcus sp. PCC 7002 (formerly known as Agmenellum quadruplicatum strain PR-6) was originally isolated in 1961 by Chase Van Baalen from an onshore, marine mud flat sample derived from fish pens on Maguyes Island, La Parguera, Puerto Rico. The organism grows in brackish (euryhaline/marine) water and is unicellular but tends to form short filaments of two to four cells during exponential growth at the temperature optimum of 38 degrees C. The strain is extremely tolerant of high light intensities and has been grown at light intensities equivalent to two suns. This unique combination of physiological and genetic properties have long made this strain an important model system to studies of the oxygenic photosynthetic apparatus, the regulation of carbon and nitrogen metabolism, and other aspects of cyanobacterial physiology and metabolism.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
289620628977531548hypothetical proteinBLASTP
289798728990751089alanine dehydrogenaseQuickGO ontologyBLASTP
28990922900057966Tyrosine recombinaseQuickGO ontologyBLASTP
29002062900916711hypothetical protein
29011202901584465hypothetical proteinBLASTP
29016282902188561glutathione S-transferaseQuickGO ontologyBLASTP
29022892902426138Photosystem II 4 kDa reaction center component superfamilyQuickGO ontology
290245329036101158queuine tRNA-ribosyltransferaseQuickGO ontologyBLASTP
29036712904126456hypothetical proteinBLASTP
29044332905221789cobalamin synthaseQuickGO ontologyBLASTP
29052012905638438bacterial pre-peptidase C-terminal domain family proteinQuickGO ontologyBLASTP
290583029059491205S ribosomal RNAQuickGO ontology
29060282908838281123S ribosomal RNAQuickGO ontologyBLASTP
2909046290912176tRNA-AlaQuickGO ontology
2909161290923474tRNA-IleQuickGO ontology
29093712910822145216S ribosomal RNAQuickGO ontologyBLASTP
291125629130071752ABC transporter family proteinQuickGO ontologyBLASTP
291314829142871140conserved hypotehtical protein UPF0075QuickGO ontologyBLASTP
29142812915198918acetylpolyamine aminohydrolaseQuickGO ontologyBLASTP
29152392915583345hypothetical proteinBLASTP
291570829173391632signal recognition particle-docking proteinQuickGO ontologyBLASTP
29174312917538108hypothetical protein
29175402918301762S4 domain proteinQuickGO ontologyBLASTP
291829829197311434deoxyribopyrimidine photolyaseQuickGO ontologyBLASTP