Pre_GI Gene

Some Help

Host: NC_009800 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009800:2083465 Escherichia coli HS, complete genome

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (HS; serotype O9) is a human commensal that was originally isolated from a laboratory scientist at Walter Reed Army Institute of Research in 1978 (Levine, 1978). Strain HS colonizes the human gastrointestinal tract in challenge experiments, but no overt signs of disease occur. Thus, this strain represents a genomic baseline for human gastrointestinal tract colonization. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
209087920919311053hypothetical proteinBLASTP
209224620935621317shikimate transporterQuickGO ontologyBLASTP
209366420951181455AMP nucleosidaseQuickGO ontologyBLASTP
20954612096177717conserved hypothetical protein TIGR01033QuickGO ontologyBLASTP
2096629209670678tRNA-AsnQuickGO ontologyBLASTP
209680620984461641MATE efflux family proteinQuickGO ontologyBLASTP
2098453209853078tRNA-AsnQuickGO ontologyBLASTP
20985672099517951transcriptional regulator CblQuickGO ontologyBLASTP
20996192100536918nitrogen assimilation regulatory protein NacQuickGO ontologyBLASTP
2100861210093878tRNA-AsnQuickGO ontologyBLASTP
21009932101925933ErfKYbiSYcfSYnhG family proteinQuickGO ontologyBLASTP
210199021030691080nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferaseQuickGO ontologyBLASTP
21030812103824744cobalamin 5-phosphate synthaseQuickGO ontologyBLASTP
21038212104366546cobinamide kinasecobinamide phosphate guanyltransferaseQuickGO ontologyBLASTP
21045002104640141hypothetical proteinBLASTP
21048312104995165hypothetical proteinBLASTP
21058432106673831phosphotriesterase family proteinQuickGO ontologyBLASTP