Pre_GI: BLASTP Hits

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Query: NC_007613:4217557:4249191 Shigella boydii Sb227, complete genome

Start: 4249191, End: 4249586, Length: 396

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic that took place in China in the 1950s. Causes dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella boydii is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010658:4494103:450647745064774506872396Shigella boydii CDC 3083-94, complete genomeendoribonuclease L-PSP family protein3e-72270
NC_010498:4821519:482803448280344828429396Escherichia coli SMS-3-5, complete genomeendoribonuclease L-PSP family protein7e-72268
NC_012967:4449576:445609144560914456486396Escherichia coli B str. REL606 chromosome, complete genomeputative mRNA endoribonuclease3e-71266
NC_012947:3947238:395762239576223958017396Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeendoribonuclease L-PSP3e-71266
AC_000091:4472000:447749444774944477889396Escherichia coli W3110 DNA, complete genomepredicted mRNA endoribonuclease1e-70264
NC_000913:4462782:447083744708374471232396Escherichia coli K12, complete genomepredicted mRNA endoribonuclease1e-70264
NC_010473:4564590:457264545726454573040396Escherichia coli str. K-12 substr. DH10B, complete genomepredicted mRNA endoribonuclease1e-70264
NC_011742:4795733:480224848022484802643396Escherichia coli S88 chromosome, complete genomemRNA endoribonuclease7e-70261
NC_011149:1578451:158904115890411589430390Salmonella enterica subsp. enterica serovar Agona str. SL483,endoribonuclease L-PSP family protein1e-58224
NC_003197:1611302:162600516260051626394390Salmonella typhimurium LT2, complete genomeputative translation initiation inhibitor1e-58224
NC_016810:1576636:158285815828581583247390Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein1e-58224
NC_016856:1621279:163598216359821636371390Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative translation initiation inhibitor1e-58224
NC_016860:1614280:162369516236951624084390Salmonella enterica subsp. enterica serovar Typhimurium strendoribonuclease L-PSP family protein1e-58224
NC_016863:1575488:158417315841731584562390Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative translation initiation inhibitor1e-58224
NC_016857:1576636:158285815828581583319462Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative translation initiation inhibitor9e-59224
NC_017046:1574057:158274215827421583158417Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein9e-59224
NC_015761:1488807:150350915035091503898390Salmonella bongori NCTC 12419, complete genomehypothetical protein2e-58224
NC_009436:3807420:382036738203673820762396Enterobacter sp. 638, complete genomeendoribonuclease L-PSP5e-56215
NC_009668:1591290:159437815943781594770393Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequenceendoribonuclease L-PSP2e-55213
NC_020181:1653261:166517216651721665573402Enterobacter aerogenes EA1509E, complete genomeprobable translation initiation inhibitor protein3e-53206
NC_015663:3742738:375266437526643753065402Enterobacter aerogenes KCTC 2190 chromosome, complete genomehypothetical protein5e-53206
NC_016612:5208936:522213152221315222526396Klebsiella oxytoca KCTC 1686 chromosome, complete genomeendoribonuclease L-PSP family protein6e-42169
NC_011283:1811000:188610318861031886492390Klebsiella pneumoniae 342 chromosome, complete genomeendoribonuclease L-PSP family protein4e-41166
NC_011094:1584038:159345315934531593779327Salmonella enterica subsp. enterica serovar Schwarzengrund strendoribonuclease L-PSP1e-40164
NC_011992:863174:876370876370876777408Acidovorax ebreus TPSY, complete genomeEndoribonuclease L-PSP1e-34145
NC_008313:886248:911312911312911713402Ralstonia eutropha H16 chromosome 1, complete sequenceputative translation initiation inhibitor, yjgF family1e-1994.7
NC_010512:110932:130333130333130731399Burkholderia cenocepacia MC0-3 chromosome 3, complete sequenceEndoribonuclease L-PSP4e-1890.1
NC_007974:138176:150604150604151227624Ralstonia metallidurans CH34 chromosome 2, complete sequenceEndoribonuclease L-PSP3e-1684
NC_003296:1665569:166827616682761668713438Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completehypothetical protein3e-1580.9
NC_003296:1696958:169846616984661698903438Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completePUTATIVE TRANSMEMBRANE PROTEIN3e-1580.9
NC_007348:2519447:254236525423652542763399Ralstonia eutropha JMP134 chromosome 2, complete sequenceEndoribonuclease L-PSP3e-1580.5
NC_020829:4390417:440964644096464410062417Pseudomonas denitrificans ATCC 13867, complete genomeendoribonuclease L-PSP5e-1579.7
NC_010172:1199725:120944312094431209829387Methylobacterium extorquens PA1, complete genomeEndoribonuclease L-PSP2e-1167.8
NC_021066:839734:843254843254843466213Raoultella ornithinolytica B6, complete genometranslation initiation inhibitor, yjgF family protein2e-1167.4
NC_011757:1246000:127379612737961274182387Methylobacterium chloromethanicum CM4, complete genomeEndoribonuclease L-PSP4e-1166.6
NC_014210:5309121:531140453114045311829426Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,Endoribonuclease L-PSP6e-1062.8
NC_014640:2693060:270855427085542708949396Achromobacter xylosoxidans A8 chromosome, complete genomeendoribonuclease L-PSP family protein7e-1062.4
NC_010645:1341475:136041313604131360799387Bordetella avium 197N, complete genomeendoribonuclease3e-0960.5
NC_010645:1341475:136079613607961361197402Bordetella avium 197N, complete genomeendoribonuclease4e-0960.1
NC_015690:3941113:397856539785653978864300Paenibacillus mucilaginosus KNP414 chromosome, complete genomeendoribonuclease L-PSP8e-0959.3
NC_012982:2415237:243796724379672438374408Hirschia baltica ATCC 49814, complete genomeEndoribonuclease L-PSP8e-0959.3
NC_016935:1365463:139792113979211398301381Paenibacillus mucilaginosus 3016 chromosome, complete genomeendoribonuclease L-PSP8e-0959.3
NC_011126:129937:135039135039135419381Hydrogenobaculum sp. Y04AAS1, complete genomeendoribonuclease L-PSP9e-0958.9
NC_015277:5211779:523113752311375231598462Sphingobacterium sp. 21 chromosome, complete genomeEndoribonuclease L-PSP2e-0857.8
NC_015496:2155816:216533021653302165776447Krokinobacter diaphorus 4H-3-7-5 chromosome, complete genomeEndoribonuclease L-PSP3e-0857.4
NC_010170:2374852:237607623760762376462387Bordetella petrii, complete genomeputative translational inhibitor7e-0855.8
NC_010623:1961685:201993020199302020382453Burkholderia phymatum STM815 chromosome 2, complete sequenceEndoribonuclease L-PSP9e-0855.8
NC_003296:1696958:170337917033791703756378Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completehypothetical protein9e-0855.5
NC_003296:1665569:167318916731891673566378Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completehypothetical protein9e-0855.5
NC_015557:114648:138504138504138884381Hydrogenobaculum sp. 3684 chromosome, complete genomeendoribonuclease L-PSP4e-0753.5
NC_015587:114684:138540138540138920381Hydrogenobaculum sp. SHO chromosome, complete genomeendoribonuclease L-PSP4e-0753.5
NC_020411:114683:138539138539138919381Hydrogenobaculum sp. HO, complete genomeendoribonuclease L-PSP4e-0753.5
NC_014221:398636:411607411607411999393Truepera radiovictrix DSM 17093 chromosome, complete genomeendoribonuclease L-PSP4e-0753.5
NC_020126:7451894:745891074589107459344435Myxococcus stipitatus DSM 14675, complete genomeendoribonuclease L-PSP1e-0652.4
NC_013132:7204082:7226261722626172280031743Chitinophaga pinensis DSM 2588, complete genomeEndoribonuclease L-PSP1e-0652
NC_015588:2939747:294143929414392941846408Isoptericola variabilis 225 chromosome, complete genomeEndoribonuclease L-PSP1e-0652
NC_003112:673772:689773689773690162390Neisseria meningitidis MC58, complete genomeputative ribonuclease1e-0652
NC_010120:609323:631641631641632030390Neisseria meningitidis 053442, complete genomeribonuclease, putative1e-0652
NC_008767:613394:634500634500634889390Neisseria meningitidis FAM18, complete genomehypothetical protein1e-0652
NC_013016:571255:589884589884590273390Neisseria meningitidis alpha14 chromosome, complete genometranslation initiation inhibitor1e-0652
NC_017501:1680075:168249516824951682884390Neisseria meningitidis 8013, complete genomeputative endoribonuclease1e-0652
NC_017505:670919:691717691717692106390Neisseria meningitidis alpha710 chromosome, complete genomehypothetical protein1e-0652
NC_017513:618500:642487642487642876390Neisseria meningitidis G2136 chromosome, complete genomeendoribonuclease L-PSP1e-0652
NC_017514:1568591:156925115692511569640390Neisseria meningitidis M01-240149 chromosome, complete genomeendoribonuclease L-PSP1e-0652
NC_017516:1613762:161442216144221614811390Neisseria meningitidis H44/76 chromosome, complete genomeendoribonuclease L-PSP1e-0652
NC_017518:743955:765382765382765771390Neisseria meningitidis NZ-05/33 chromosome, complete genomeendoribonuclease L-PSP1e-0652
NC_017515:1601954:160261416026141603003390Neisseria meningitidis M04-240196 chromosome, complete genomeendoribonuclease L-PSP1e-0652
NC_007948:360199:369335369335369733399Polaromonas sp. JS666, complete genomeEndoribonuclease L-PSP1e-0652
NC_010623:1961685:197300619730061973410405Burkholderia phymatum STM815 chromosome 2, complete sequenceEndoribonuclease L-PSP2e-0651.6
NC_016860:4024000:404045640404564040836381Salmonella enterica subsp. enterica serovar Typhimurium strtranslation initiation inhibitor3e-0650.4
NC_014931:2511423:252562525256252526026402Variovorax paradoxus EPS chromosome, complete genomeEndoribonuclease L-PSP6e-0649.7