Pre_GI: BLASTP Hits

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Query: NC_007384:2007467:2029061 Shigella sonnei Ss046, complete genome

Start: 2029061, End: 2029468, Length: 408

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. A leading cause of dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. This extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007606:1209132:121119912111991211606408Shigella dysenteriae Sd197, complete genomehypothetical protein4e-74276
NC_013364:1596278:160020016002001600529330Escherichia coli O111:H- str. 11128, complete genomehypothetical protein2e-57220
NC_009801:1392696:139568313956831396012330Escherichia coli E24377A, complete genomehypothetical protein2e-57220
NC_020063:2011019:201189020118902012219330Enterobacteriaceae bacterium strain FGI 57, complete genomehypothetical protein1e-54211
NC_011283:2185462:218741221874122187741330Klebsiella pneumoniae 342 chromosome, complete genomedsDNA-mimic protein1e-53207
NC_013850:2103469:212095621209562121285330Klebsiella variicola At-22 chromosome, complete genomeprotein of unknown function DUF4401e-53207
NC_014121:1653385:167088616708861671215330Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein1e-53207
NC_010465:2282874:229161322916132291966354Yersinia pseudotuberculosis YPIII, complete genomeprotein of unknown function DUF4407e-53205
NC_008150:1705152:173618517361851736538354Yersinia pestis Antiqua, complete genomehypothetical protein7e-53205
NC_008149:1842500:187284618728461873199354Yersinia pestis Nepal516, complete genomehypothetical protein7e-53205
NC_009381:1064227:107229410722941072647354Yersinia pestis Pestoides F chromosome, complete genomedsDNA-mimic protein7e-53205
NC_004088:2227278:224045822404582240832375Yersinia pestis KIM, complete genomehypothetical protein6e-53205
NC_010159:2252380:225554122555412255864324Yersinia pestis Angola, complete genomehypothetical protein1e-52204
NC_009708:2245586:225435622543562254679324Yersinia pseudotuberculosis IP 31758 chromosome, complete genomedsDNA-mimic protein1e-52204
NC_014029:2138000:214895821489582149281324Yersinia pestis Z176003 chromosome, complete genomehypothetical protein1e-52204
NC_017160:2054289:207655020765502076873324Yersinia pestis D182038 chromosome, complete genomehypothetical protein1e-52204
NC_017168:3290380:329784832978483298171324Yersinia pestis A1122 chromosome, complete genomedsDNA-mimic protein1e-52204
NC_017265:1765399:177935917793591779682324Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,putative double-stranded DNA mimic1e-52204
NC_015968:2583721:258372125837212584050330Enterobacter asburiae LF7a chromosome, complete genomehypothetical protein9e-53204
NC_014837:2354241:237355623735562373885330Pantoea sp. At-9b chromosome, complete genomehypothetical protein3e-50196
NC_009778:1477841:149717414971741497503330Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein8e-50195
NC_020260:1535394:155607915560791556408330Cronobacter sakazakii Sp291, complete genomedsDNA-mimic protein8e-50195
NC_012779:1629731:163362216336221633960339Edwardsiella ictaluri 93-146, complete genomehypothetical protein8e-44175