Pre_GI: BLASTP Hits

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Query: NC_007333:2093167:2093167 Thermobifida fusca YX, complete genome

Start: 2093167, End: 2094786, Length: 1620

Host Lineage: Thermobifida fusca; Thermobifida; Nocardiopsaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Produces thermostable enzymes. Members of this genus are distinguished from most actinomycetes by their ability to form clustered spores that attach directly to the substrate mycelia, and not to the aerial mycelia. Moreover, these bacteria do not produce aerial mycelia at all. M. fusca is the most thermophilic, with some growth detectable at up to 75 degrees C. The natural habitat of Thermobifida is self-heated organic materials, like rotting hay, compost, manure or urban waste piles, etc., which they share with other thermophilic and thermotolerant actinomycetes. Biological and physiological features of these bacteria are accordingly adapted to the conditions of such environments, namely the high temperatures and the presence of abundant plant materials and other bio-polymer substrates of natural origin. Actinomycetes are well suited for this environment because they generally grow as branching hyphae and are well adapted to penetration and degradation of insoluble substrates such as lignocellulose. Spores of Thermobifida are known to cause allergic respiratory diseases called mushroom worker disease and farmer's lung, which develop in agricultural workers who by the nature of their work happen to breathe in significant amounts of actinomycete spores from hay, compost, etc. Some isolates of this organism are able to mineralize plastic disposals and other anthropogenic xenobiotics. Thermobifidaare of particular interest because they produce multiple thermostable enzymes involved in the degradation of lignocellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010184:3213347:3215590321559032172091620Bacillus weihenstephanensis KBAB4, complete genomeAmidohydrolase 31e-75284
NC_012522:3867167:3889481388948138911871707Rhodococcus opacus B4, complete genomeputative hydrolase1e-57224
NC_011831:1610346:1631230163123016328281599Chloroflexus aggregans DSM 9485, complete genomeAmidohydrolase 37e-57222
NC_013524:171524:1822641822641839761713Sphaerobacter thermophilus DSM 20745 chromosome 2, complete genomeAmidohydrolase 32e-56220
NC_011772:4565418:4569412456941245709801569Bacillus cereus G9842, complete genomehypothetical protein1e-54214
NC_011725:4600000:4604131460413146056991569Bacillus cereus B4264 chromosome, complete genomehypothetical protein6e-53209
NC_015977:2631789:2654238265423826558031566Roseburia hominis A2-183 chromosome, complete genomeamidohydrolase1e-51204
NC_015510:1978539:1999705199970520012611557Haliscomenobacter hydrossis DSM 1100 chromosome, complete genomeAmidohydrolase 37e-50198
NC_015733:2658337:2673459267345926751171659Pseudomonas putida S16 chromosome, complete genomeputative periplasmic protein4e-48192
NC_007974:1135863:1137708113770811393901683Ralstonia metallidurans CH34 chromosome 2, complete sequenceAmidohydrolase 38e-46185
NC_017249:2109843:2133816213381621355071692Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein7e-46185
NC_014364:2904443:2913059291305929146661608Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeAmidohydrolase 32e-45184
NC_013093:1213908:1218379121837912199561578Actinosynnema mirum DSM 43827, complete genomeAmidohydrolase 34e-44179
NC_017249:2109843:2130099213009921317841686Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein7e-44178
NC_015957:5310000:5325690532569053273091620Streptomyces violaceusniger Tu 4113 chromosome, complete genomeamidohydrolase 38e-44178
NC_015723:2550000:2570566257056625722421677Cupriavidus necator N-1 chromosome 2, complete sequenceamidohydrolase3e-43176
NC_013204:34782:4104841048426311584Eggerthella lenta DSM 2243, complete genomeAmidohydrolase 32e-41171
NC_020156:3050423:3064525306452530662341710Nonlabens dokdonensis DSW-6, complete genomeamidohydrolase-like protein2e-41170
NC_009092:1047500:1057371105737110591191749Shewanella loihica PV-4, complete genomeAmidohydrolase 38e-40165
NC_021184:2936244:2969732296973229714321701Desulfotomaculum gibsoniae DSM 7213, complete genomeputative TIM-barrel fold metal-dependent hydrolase2e-39164
NC_010505:5077162:5079761507976150813981638Methylobacterium radiotolerans JCM 2831, complete genomeAmidohydrolase 36e-39162
NC_008942:1706191:1726815172681517284161602Methanocorpusculum labreanum Z, complete genomehypothetical protein6e-38159
NC_007348:2558500:2576872257687225785151644Ralstonia eutropha JMP134 chromosome 2, complete sequenceAmidohydrolase:Amidohydrolase-like4e-37156
NC_008044:857759:8780168780168796831668Silicibacter sp. TM1040, complete genomeAmidohydrolase 32e-36154
NC_009922:944538:9445389445389461421605Alkaliphilus oremlandii OhILAs, complete genomeAmidohydrolase 39e-36152
NC_014924:2399524:2424848242484824265721725Pseudoxanthomonas suwonensis 11-1 chromosome, complete genomeAmidohydrolase 31e-35151
NC_014973:3290545:3316892331689233187031812Geobacter sp. M18 chromosome, complete genomeAmidohydrolase 33e-35150
NC_018607:1505908:1545214154521415468001587Brachyspira pilosicoli B2904 chromosome, complete genomeamidohydrolase9e-34145
NC_014330:195447:2145912145912161771587Brachyspira pilosicoli 95/1000 chromosome, complete genomeamidohydrolase 31e-33145
NC_011001:2085986:2146425214642521480501626Burkholderia cenocepacia J2315 chromosome 2, complete sequenceputative amidohydrolase1e-33144
NC_019908:436000:4421614421614437471587Brachyspira pilosicoli P43/6/78 chromosome, complete genomeamidohydrolase 32e-33144
NC_014624:1349950:1354311135431113560351725Eubacterium limosum KIST612 chromosome, complete genomeexoenzyme regulatory protein2e-32140
NC_017986:4790482:4816106481610648177731668Pseudomonas putida ND6 chromosome, complete genomeamidohydrolase 38e-32138
NC_020291:5778999:5783451578345157852021752Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeputative TIM-barrel fold metal-dependent hydrolase2e-31137
NC_011769:787496:7874967874967891181623Desulfovibrio vulgaris str. 'Miyazaki F', complete genomeAmidohydrolase 38e-31135
NC_002928:507749:5117275117275133761650Bordetella parapertussis 12822, complete genomehypothetical protein3e-30133
NC_010338:4481356:4481356448135644829901635Caulobacter sp. K31, complete genomeAmidohydrolase 33e-30133
NC_018080:2732962:2750916275091627526581743Pseudomonas aeruginosa DK2 chromosome, complete genomehypothetical protein3e-30133
NC_014831:2258398:2296032229603222979931962Thermaerobacter marianensis DSM 12885 chromosome, complete genomeAmidohydrolase 37e-30132
NC_002927:506183:5101635101635118121650Bordetella bronchiseptica RB50, complete genomehypothetical protein2e-29130
NC_014931:1044313:1066641106664110686231983Variovorax paradoxus EPS chromosome, complete genomeAmidohydrolase 34e-29129
NC_008781:1426285:1426285142628514281651881Polaromonas naphthalenivorans CJ2, complete genomeAmidohydrolase 34e-29129
NC_015723:280368:2988722988723008181947Cupriavidus necator N-1 chromosome 2, complete sequenceamidohydrolase1e-28128
NC_011958:53426:5637756377580291653Rhodobacter sphaeroides KD131 chromosome 2, complete genomeAmidohydrolase 32e-28127
NC_012225:212727:2145972145972161441548Brachyspira hyodysenteriae WA1, complete genomeamidohydrolase 35e-28126
NC_007494:27084:3151831518331701653Rhodobacter sphaeroides 2.4.1 chromosome 2, complete sequencePutative metal-dependent hydrolase9e-28125
NC_009050:604950:6093846093846110361653Rhodobacter sphaeroides ATCC 17029 chromosome 2, complete sequenceAmidohydrolase 38e-28125
NC_012526:2317862:2322070232207023235571488Deinococcus deserti VCD115, complete genomeputative amidohydrolase7e-28125
NC_020126:7686076:7702658770265877043221665Myxococcus stipitatus DSM 14675, complete genomehypothetical protein2e-27124
NC_009656:2801885:2840830284083028425721743Pseudomonas aeruginosa PA7 chromosome, complete genomehypothetical protein4e-27123
NC_015566:3269469:3289042328904232909191878Serratia sp. AS12 chromosome, complete genomeAmidohydrolase 39e-27122
NC_004129:5781413:5782703578270357844481746Pseudomonas fluorescens Pf-5, complete genomeamidohydrolase family protein8e-27122
NC_014012:1097938:1111222111122211129341713Shewanella violacea DSS12, complete genomemetal-dependent hydrolase, putative7e-24112
NC_005085:2869159:2886315288631528882311917Chromobacterium violaceum ATCC 12472, complete genomehypothetical protein5e-23109
NC_015161:792955:7929557929557944691515Deinococcus proteolyticus MRP chromosome, complete genomeAmidohydrolase 31e-22108
NC_016109:6816000:6837766683776668394061641Kitasatospora setae KM-6054, complete genomeputative peptidase M38 family protein6e-22105
NC_015138:2110149:2127643212764321295111869Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completeAmidohydrolase 31e-1792
NC_015382:172213:1722131722131740901878Burkholderia gladioli BSR3 plasmid bgla_1p, complete sequenceAmidohydrolase 32e-1688.2
NC_013174:1366786:1382767138276713843921626Jonesia denitrificans DSM 20603, complete genomeAmidohydrolase 34e-1583.6
NC_014623:2475598:2487833248783324898572025Stigmatella aurantiaca DW4/3-1 chromosome, complete genomeamidohydrolase domain-containing protein5e-1583.2
NC_009953:2727669:2738129273812927396941566Salinispora arenicola CNS-205 chromosome, complete genomeamidohydrolase 36e-1582.8
UCMB5137:2418403:2423962242396224257941833Bacillus atrophaeus UCMB-5137metal-dependent hydrolase1e-1482
NC_014639:2452286:2458654245865424604861833Bacillus atrophaeus 1942 chromosome, complete genomemetal-dependent hydrolase7e-1479.3
CP002207:2452286:2458654245865424604861833Bacillus atrophaeus 1942, complete genomemetal-dependent hydrolase7e-1479.3
NC_009663:2531876:2547976254797625498561881Sulfurovum sp. NBC37-1, complete genomemetal-dependent hydrolase5e-1376.6
NC_008278:4023918:4041168404116840427691602Frankia alni ACN14a, complete genomeconserved hypothetical protein; putative metallo-dependent hydrolase domain8e-1375.9
NC_015389:809474:8330638330638346341572Coriobacterium glomerans PW2 chromosome, complete genomeAmidohydrolase 35e-1272.8
NC_009997:2352948:2374896237489623771092214Shewanella baltica OS195, complete genomeAmidohydrolase 31e-1171.6
NC_008095:4669947:4683209468320946852242016Myxococcus xanthus DK 1622, complete genomeputative lipoprotein1e-1171.6
NC_015434:3507059:3515997351599735174301434Verrucosispora maris AB-18-032 chromosome, complete genomeamidohydrolase 33e-1170.5
NC_015593:463477:4698474698474719132067Sphingobium chlorophenolicum L-1 chromosome chromosome 1, completeamidohydrolase2e-0964.7
NC_014318:5183975:5202844520284452044391596Amycolatopsis mediterranei U32 chromosome, complete genomeamidohydrolase3e-0963.9
NC_017186:5184000:5202878520287852044731596Amycolatopsis mediterranei S699 chromosome, complete genomeamidohydrolase3e-0963.9
NC_007777:2638580:2650987265098726526331647Frankia sp. CcI3, complete genomeAmidohydrolase 38e-0962.4
NC_009921:4948500:4960385496038549620761692Frankia sp. EAN1pec, complete genomeAmidohydrolase 31e-0862
NC_009380:2548878:2558288255828825597841497Salinispora tropica CNB-440 chromosome, complete genomeamidohydrolase 39e-0858.9
NC_016804:2254979:2273930227393022755341605Mycobacterium bovis BCG str. Mexico chromosome, complete genomehypothetical protein1e-0758.5
NC_016768:2101751:2102283210228321038871605Mycobacterium tuberculosis KZN 4207 chromosome, complete genomehypothetical protein1e-0758.5
NC_012943:2103662:2104194210419421057981605Mycobacterium tuberculosis KZN 1435 chromosome, complete genomehypothetical protein1e-0758.5
NC_009565:2306574:2325525232552523271291605Mycobacterium tuberculosis F11, complete genomehypothetical protein1e-0758.5
NC_015312:5240653:5264634526463452659651332Pseudonocardia dioxanivorans CB1190 chromosome, complete genomeamidohydrolase 38e-0755.8