Pre_GI Gene

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Host: NC_008044 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_008044:857759 Silicibacter sp. TM1040, complete genome

Host Lineage: Ruegeria; Ruegeria; Rhodobacteraceae; Rhodobacterales; Proteobacteria; Bacteria

General Information: This strain was isolated from a culture of the dinoflagellate Pfiesteria piscicida CCMP1830 which has been implicated in many large scale algal blooms resulting in increased mortality in fish. The bacteria are attached to the surface of the dinoflagellate and in some ways allow the dinoflagellate to grow as those lacking the bacteria die off. The bacterium also chemotaxes towards the dinoflagellate product DMSP (dimethylsulfoniopropionate) and metabolizes it. DMSP is a major source of sulfur in marine ecosystems and plays a role in the sulfur biogeochemical cycle. The implication is a tight association between these important dinoflagellates and this marine bacterium.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
857759858004246hypothetical protein
858001858372372transcriptional regulator XRE familyQuickGO ontologyBLASTP
858386858688303hypothetical proteinBLASTP
858798859124327hypothetical protein
859121859564444hypothetical protein
8595818639364356Tape measure domainQuickGO ontologyBLASTP
863936864880945hypothetical proteinBLASTP
8648778663941518hypothetical proteinBLASTP
866391866936546hypothetical proteinBLASTP
866908867261354hypothetical proteinBLASTP
867268867564297hypothetical proteinBLASTP
867561867995435hypothetical proteinBLASTP
867997868806810protein of unknown function DUF847QuickGO ontologyBLASTP
868803869201399hypothetical proteinBLASTP
869373869987615two component transcriptional regulator LuxR familyQuickGO ontologyBLASTP
870157870582426response regulator receiver proteinQuickGO ontologyBLASTP
8705798717631185PASPAC sensor signal transduction histidine kinaseQuickGO ontologyBLASTP
872933873844912transcriptional regulator LysR familyQuickGO ontologyBLASTP
8739568755061551NADHUbiquinoneplastoquinone complex IQuickGO ontologyBLASTP
8755218779382418hypothetical proteinBLASTP
8780168796831668Amidohydrolase 3QuickGO ontologyBLASTP
8797618807861026extracellular solute-binding protein family 1QuickGO ontologyBLASTP