Pre_GI: BLASTP Hits

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Query: NC_005139:2201820:2254984 Vibrio vulnificus YJ016 chromosome I, complete sequence

Start: 2254984, End: 2255754, Length: 771

Host Lineage: Vibrio vulnificus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a Biotype 1 hospital isolate from Taiwan. It contains larger chromosomes and >1000 genes as compared to Vibrio cholerae and contains a conjugative plasmid, pYJ016. There are numerous virulence factors including a cytolysin, protease, capsular polysaccharide as well as iron-uptake systems encoded in the genome. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Organisms of this species are opportunistic pathogens that can attack immunocompromised patients and causes gastroenteritis (inflammation of mucous membranes of stomach and intestine), wound infections, and primary septicemia (spread of the organism through the blood). This organism is the major cause of death from eating raw oysters, especially in people with liver damage. It only affects humans and other primates.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_002505:514732:544362544362545177816Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, completetranscriptional regulator, AraC/XylS family3e-2099
NC_012668:62500:751637516375978816Vibrio cholerae MJ-1236 chromosome 1, complete sequenceAraC family transcriptional regulator2e-1996.7
NC_016445:2938887:295541629554162956213798Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completetranscriptional regulator AraC/XylS family2e-1996.7
NC_010334:1561691:156569015656901566499810Shewanella halifaxensis HAW-EB4, complete genometranscriptional regulator, AraC family2e-1789.4
NC_009901:1516340:152043815204381521247810Shewanella pealeana ATCC 700345, complete genometranscriptional regulator, AraC family3e-1582.4
NC_015566:3417951:345056934505693451453885Serratia sp. AS12 chromosome, complete genomeAraC family transcriptional regulator5e-0858.2
NC_016832:2829767:284300628430062843935930Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Transcriptional regulator hilD3e-0755.5
NC_003198:2856596:286985028698502870779930Salmonella enterica subsp. enterica serovar Typhi str. CT18,AraC-family transcriptional regulator3e-0755.5
NC_004631:2842453:285570728557072856636930Salmonella enterica subsp. enterica serovar Typhi Ty2, completeAraC-family transcriptional regulator3e-0755.5
NC_007645:6407370:642240164224016423237837Hahella chejuensis KCTC 2396, complete genomeAraC-type DNA-binding domain-containing protein3e-0755.5
NC_012779:2424967:244536924453692446169801Edwardsiella ictaluri 93-146, complete genometranscriptional regulator, AraC family protein5e-0755.1
NC_011083:2980356:299235029923502993279930Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,transcriptional regulator HilD1e-0653.9
NC_006511:2819128:283238228323822833311930Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCAraC-family transcriptional regulator1e-0653.9
NC_003197:3005842:301783630178363018765930Salmonella typhimurium LT2, complete genomeinvasion protein regulatory protein1e-0653.9
NC_011149:2912219:292636429263642927293930Salmonella enterica subsp. enterica serovar Agona str. SL483,transcriptional regulator HilD1e-0653.9
NC_010102:2967464:298081829808182981747930Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein1e-0653.9
NC_011094:2913500:292504229250422925971930Salmonella enterica subsp. enterica serovar Schwarzengrund strtranscriptional regulator HilD1e-0653.9
NC_011147:2814664:282791828279182828847930Salmonella enterica subsp. enterica serovar Paratyphi A straraC family transcriptional regulator1e-0653.9
NC_011274:2881306:289330028933002894229930Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91AraC family transcriptional regulator1e-0653.9
NC_011294:2890500:290249529024952903424930Salmonella enterica subsp. enterica serovar Enteritidis strAraC family transcriptional regulator1e-0653.9
NC_016810:3028421:304041230404123041341930Salmonella enterica subsp. enterica serovar Typhimurium strAraC family transcriptional regulator1e-0653.9
NC_016831:2867766:287975928797592880688930Salmonella enterica subsp. enterica serovar Gallinarum/pullorumAraC family transcriptional regulator1e-0653.9
NC_012125:2938519:295174729517472952676930Salmonella enterica subsp. enterica serovar Paratyphi C strainAraC family transcriptional regulator1e-0653.9
NC_006905:2960260:297136329713632972292930Salmonella enterica subsp. enterica serovar Choleraesuis strregulatory helix-turn-helix proteins, araC family1e-0653.9
NC_011080:2982346:299434029943402995269930Salmonella enterica subsp. enterica serovar Newport str. SL254,transcriptional regulator HilD1e-0653.9
NC_017046:3027161:303915230391523040081930Salmonella enterica subsp. enterica serovar Typhimurium str. 798AraC family transcriptional regulator1e-0653.9
NC_016863:2974333:298632629863262987255930Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1invasion protein regulatory protein1e-0653.9
NC_016860:3029272:304126630412663042195930Salmonella enterica subsp. enterica serovar Typhimurium strtranscriptional regulator HilD1e-0653.9
NC_016857:3028421:304041230404123041341930Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74invasion protein regulatory protein1e-0653.9
NC_016856:3026426:303807330380733039002930Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sinvasion protein regulatory protein1e-0653.9
NC_011205:3050235:306222730622273063156930Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853transcriptional regulator HilD2e-0653.1
NC_015761:2726000:273806627380662738995930Salmonella bongori NCTC 12419, complete genomeAraC family transcriptional regulator2e-0653.1