Pre_GI: BLASTP Hits

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Query: NC_004741:3992384:4013434 Shigella flexneri 2a str. 2457T, complete genome

Start: 4013434, End: 4013574, Length: 141

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This is a highly virulent strain that has been widely used for genetic and clinical research. Causes enteric disease. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011745:4226186:4226186422618642272201035Escherichia coli ED1a chromosome, complete genomeputative glycosyl transferase3e-2097.4
NC_011748:4167043:4167043416704341680771035Escherichia coli 55989, complete genomeputative glycosyl transferase2e-2097.4
NC_009801:4108179:4108179410817941092131035Escherichia coli E24377A, complete genomeglycosyl transferase, group 2 family protein3e-2097.4
NC_012967:3729813:3729813372981337308471035Escherichia coli B str. REL606 chromosome, complete genomeputative glycosyl transferase3e-2097.4
NC_012947:94930:1135901135901146241035Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeglycosyl transferase3e-2097.4
NC_012759:3675396:3675396367539636764301035Escherichia coli BW2952 chromosome, complete genomeputative glycosyl transferase3e-2097.4
NC_011742:3998285:3998285399828539993191035Escherichia coli S88 chromosome, complete genomeglycosyl transferase family protein3e-2097.4
NC_008563:4083558:4083558408355840845921035Escherichia coli APEC O1, complete genomepredicted glycosyl transferase YibD3e-2097.4
AC_000091:3827856:3850334385033438513681035Escherichia coli W3110 DNA, complete genomepredicted glycosyl transferase3e-2097.4
NC_004431:4223232:4223232422323242242661035Escherichia coli CFT073, complete genomePutative glycosyl transferase yibD3e-2097.4
NC_010473:3883701:3884647388464738856811035Escherichia coli str. K-12 substr. DH10B, complete genomepredicted glycosyl transferase3e-2097.4
NC_007946:4050762:4050762405076240517961035Escherichia coli UTI89, complete genomeputative glycosyl transferase YibD3e-2097.4
NC_000913:3786124:3787070378707037881041035Escherichia coli K12, complete genomepredicted glycosyl transferase3e-2097.4
NC_010468:80000:9849898498995321035Escherichia coli ATCC 8739, complete genomeglycosyl transferase family 23e-2097.4
CU928145:4167043:4167043416704341680771035Escherichia coli 55989 chromosome, complete genomeputative glycosyl transferase2e-2097.4
NC_011601:4036590:4036590403659040376241035Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeglycosyl transferase family protein2e-2097.4
NC_010658:3774110:3775056377505637760901035Shigella boydii CDC 3083-94, complete genomeglycosyl transferase, group 2 family protein2e-2097.4
NC_007613:3637832:3637832363783236388661035Shigella boydii Sb227, complete genome2e-2097.4
NC_011750:4307166:4307166430716643082001035Escherichia coli IAI39 chromosome, complete genomeputative glycosyl transferase2e-2097.4
NC_011751:4251296:4251296425129642523301035Escherichia coli UMN026 chromosome, complete genomeputative glycosyl transferase2e-2097.4
NC_008253:3896704:3896704389670438977381035Escherichia coli 536, complete genomeputative glycosyl transferase YibD2e-2097.4
NC_016902:88500:1069271069271079611035Escherichia coli KO11FL chromosome, complete genomefamily 2 glycosyl transferase2e-2097.4
NC_013361:4991020:5010536501053650115701035Escherichia coli O26:H11 str. 11368 chromosome, complete genomeglycosyl transferase family protein2e-2097.4
NC_013353:4668181:4687685468768546887191035Escherichia coli O103:H2 str. 12009, complete genomeglycosyl transferase2e-2097.4
NC_011741:3862935:3862935386293538639691035Escherichia coli IAI1 chromosome, complete genomeputative glycosyl transferase2e-2097.4
NC_009800:3821824:3821824382182438228581035Escherichia coli HS, complete genomeglycosyl transferase, group 2 family protein2e-2097.4
CP002185:3998112:3998112399811239991461035Escherichia coli W, complete genomepredicted glycosyl transferase2e-2097.4
AP010958:4668181:4687685468768546887191035Escherichia coli O103:H2 str. 12009 DNA, complete genomepredicted glycosyl transferase2e-2097.4
CP002516:88500:1069271069271079611035Escherichia coli KO11, complete genomeglycosyl transferase family 22e-2097.4
CU928160:3862935:3862935386293538639691035Escherichia coli IAI1 chromosome, complete genomeputative glycosyl transferase2e-2097.4
NC_011415:4040211:4040211404021140412451035Escherichia coli SE11 chromosome, complete genomeputative glycosyl transferase2e-2097.4
NC_016822:4093000:411319641131964113336141Shigella sonnei 53G, complete genomeputative glycosyl transferase2e-1994.7
NC_007384:3956465:3974605397460539764161812Shigella sonnei Ss046, complete genome2e-1994
NC_013716:4408201:4429792442979244308261035Citrobacter rodentium ICC168, complete genomeputative glycosyl transferase2e-1270.9
NC_004631:3910451:3932248393224839332821035Salmonella enterica subsp. enterica serovar Typhi Ty2, completeputative glycosyl transferase4e-1270.1
NC_003198:3924952:3946749394674939477831035Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative glycosyltransferase4e-1270.1
NC_016832:3900000:3921045392104539220791035Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Glycosyl transferase, group 24e-1270.1
NC_011274:3894387:3915146391514639161801035Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91glycosyl transferase4e-1270.1
NC_011294:3782655:3782655378265537836891035Salmonella enterica subsp. enterica serovar Enteritidis strglycosyl transferase family protein4e-1270.1
NC_016831:3875134:3895894389589438969281035Salmonella enterica subsp. enterica serovar Gallinarum/pullorumputative glycosyltransferase4e-1270.1
NC_010067:3846962:3866389386638938674231035Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein4e-1270.1
NC_007606:3784847:3784847378484737858511005Shigella dysenteriae Sd197, complete genomeputative regulator1e-1168.6
NC_013008:4595043:4595043459504345960591017Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeglycosyl transferase5e-1166.2
NC_011353:4639002:4639002463900246400181017Escherichia coli O157:H7 str. EC4115 chromosome, complete genome5e-1166.2
NC_020063:97436:1156211156211166611041Enterobacteriaceae bacterium strain FGI 57, complete genomeglycosyl transferase1e-0755.5