Pre_GI: BLASTP Hits

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Query: NC_004741:3041294:3096365 Shigella flexneri 2a str. 2457T, complete genome

Start: 3096365, End: 3097951, Length: 1587

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This is a highly virulent strain that has been widely used for genetic and clinical research. Causes enteric disease. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017328:3088907:3145297314529731468831587Shigella flexneri 2002017 chromosome, complete genomeputative permease0857
NC_013353:3669500:3724066372406637257481683Escherichia coli O103:H2 str. 12009, complete genomeglycolate transporter0825
AP010958:3669500:3724066372406637257481683Escherichia coli O103:H2 str. 12009 DNA, complete genomeglycolate transporter0825
NC_004431:3513147:3534256353425635359381683Escherichia coli CFT073, complete genomeGlycolate permease glcA0822
NC_004337:3049118:3107700310770031090971398Shigella flexneri 2a str. 301, complete genomeputative permease0767
NC_010501:734363:7673967673967690661671Pseudomonas putida W619, complete genomeL-lactate transport0640
NC_012560:4350465:4367732436773243694171686Azotobacter vinelandii DJ, complete genomeL-lactate permease, Lldp0639
NC_021150:4350461:4367728436772843694131686Azotobacter vinelandii CA6, complete genomeL-lactate permease, Lldp0639
NC_008027:775896:7976527976527993221671Pseudomonas entomophila L48, complete genomeL-lactate permease4e-180631
NC_012660:5793200:5793200579320057948941695Pseudomonas fluorescens SBW25 chromosome, complete genomeglycolate permease2e-178625
NC_007492:857428:8856418856418873351695Pseudomonas fluorescens PfO-1, complete genomeL-lactate permease2e-175615
NC_004337:3590323:3749997374999737516521656Shigella flexneri 2a str. 301, complete genomeL-lactate permease2e-136486
NC_012759:3648500:3663748366374836654031656Escherichia coli BW2952 chromosome, complete genomeL-lactate permease3e-136485
NC_007606:3755155:3773192377319237748471656Shigella dysenteriae Sd197, complete genomeL-lactate permease4e-136485
NC_016023:755237:7561647561647578371674Bacillus coagulans 36D1 chromosome, complete genomeL-lactate transport6e-96351
NC_010505:2690939:2702858270285827045251668Methylobacterium radiotolerans JCM 2831, complete genomeL-lactate transport3e-81303
NC_016778:329288:3499103499103515471638Brucella canis HSK A52141 chromosome 1, complete sequenceL-lactate transporter1e-79297
NC_016795:1673464:1691584169158416932211638Brucella abortus A13334 chromosome 1, complete sequenceL-lactate transporter2e-78293
NC_008599:128431:1293281293281309231596Campylobacter fetus subsp. fetus 82-40, complete genomeglycolate permease GlcA3e-77289
NC_013235:3913000:3916064391606439177641701Nakamurella multipartita DSM 44233, complete genomeL-lactate transport2e-70266
NC_015723:1486000:1515778151577815176041827Cupriavidus necator N-1 chromosome 2, complete sequenceglycolate permease GlcA6e-68258
NC_010617:774914:8223208223208239181599Kocuria rhizophila DC2201, complete genomeputative L-lactate permease2e-64247
NC_008268:3418000:3420238342023834219381701Rhodococcus sp. RHA1, complete genomeL-lactate permease6e-60232
NC_015145:3236445:3269253326925332709711719Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genomeL-lactate transport2e-56221
NC_017317:944218:9593319593319609831653Corynebacterium ulcerans 809 chromosome, complete genomeL-lactate permease5e-55216
NC_015683:947048:9621629621629638141653Corynebacterium ulcerans BR-AD22 chromosome, complete genomeL-lactate permease5e-55216
NC_014329:844622:8800738800738817251653Corynebacterium pseudotuberculosis FRC41 chromosome, completeL-lactate permease2e-54214
NC_016781:844613:8800648800648817161653Corynebacterium pseudotuberculosis 3/99-5 chromosome, completeL-lactate permease2e-54214
NC_017031:863093:8799148799148815661653Corynebacterium pseudotuberculosis P54B96 chromosome, completeL-lactate permease2e-54214
NC_017300:863898:8799698799698816211653Corynebacterium pseudotuberculosis 1002 chromosome, completeL-lactate permease2e-54214
NC_017301:863500:8796918796918813431653Corynebacterium pseudotuberculosis C231 chromosome, completeL-lactate permease2e-54214
NC_017303:863060:8798848798848815361653Corynebacterium pseudotuberculosis I19 chromosome, complete genomeL-lactate permease2e-54214
NC_016932:832748:8681858681858698371653Corynebacterium pseudotuberculosis 316 chromosome, complete genomeL-lactate permease3e-54213
NC_017305:863072:8798968798968815481653Corynebacterium pseudotuberculosis PAT10 chromosome, completeL-lactate permease1e-53211
NC_014643:535708:5527645527645544371674Rothia dentocariosa ATCC 17931 chromosome, complete genomeL-lactate transporter1e-51204
NC_013209:2476039:2491579249157924931711593Acetobacter pasteurianus IFO 3283-01, complete genomeL-lactate permease2e-47190
NC_017100:2476822:2492786249278624943781593Acetobacter pasteurianus IFO 3283-03, complete genomeL-lactate permease2e-47190
NC_017108:2474583:2490123249012324917151593Acetobacter pasteurianus IFO 3283-12, complete genomeL-lactate permease2e-47190
NC_017111:2474601:2490141249014124917331593Acetobacter pasteurianus IFO 3283-32, complete genomeL-lactate permease2e-47190
NC_017121:2474588:2490128249012824917201593Acetobacter pasteurianus IFO 3283-07, complete genomeL-lactate permease2e-47190
NC_017125:2476802:2492766249276624943581593Acetobacter pasteurianus IFO 3283-22, complete genomeL-lactate permease2e-47190
NC_017146:2476844:2492808249280824944001593Acetobacter pasteurianus IFO 3283-26, complete genomeL-lactate permease2e-47190
NC_017150:2383361:2399325239932524009171593Acetobacter pasteurianus IFO 3283-01-42C, complete genomeL-lactate permease2e-47190
NC_017186:2252438:2252438225243822540481611Amycolatopsis mediterranei S699 chromosome, complete genomelactate transporter LctP family protein3e-39163
NC_014318:2252417:2252417225241722540271611Amycolatopsis mediterranei U32 chromosome, complete genomelactate transporter, LctP family3e-39163
NC_016884:256598:2579122579122595161605Sulfobacillus acidophilus DSM 10332 chromosome, complete genomeL-lactate permease1e-33144
NC_015757:263938:2652522652522668561605Sulfobacillus acidophilus TPY chromosome, complete genomeL-lactate transport1e-33144
NC_015567:1206727:1225520122552012270761557Serratia sp. AS9 chromosome, complete genomeL-lactate transport1e-27124
NC_015566:1206500:1225335122533512268911557Serratia sp. AS12 chromosome, complete genomeL-lactate transport1e-27124
NC_016776:1878791:1895561189556118970601500Bacteroides fragilis 638R, complete genomeputative L-lactate permease8e-23108
NC_003228:1870953:1891138189113818926371500Bacteroides fragilis NCTC 9343, complete genomeputative L-lactate permease2e-22107
NC_012658:1052957:1069269106926910707921524Clostridium botulinum Ba4 str. 657 chromosome, complete genomeL-lactate permease4e-2099.8
NC_008710:621822:6352986352986368331536Borrelia turicatae 91E135, complete genomeL-lactate permease4e-2099.8
NC_009699:1122000:1130103113010311316261524Clostridium botulinum F str. Langeland chromosome, complete genomeL-lactate permease5e-2099.8
NC_010520:1146000:1160234116023411617571524Clostridium botulinum A3 str. Loch Maree, complete genomeL-lactate permease6e-2099.4
NC_010674:1390473:1397041139704113985851545Clostridium botulinum B str. Eklund 17B, complete genomeL-lactate permease3e-1893.6
NC_010723:1379256:1388238138823813897881551Clostridium botulinum E3 str. Alaska E43, complete genomeL-lactate permease9e-1892
NC_009617:3360990:3368164336816433696271464Clostridium beijerinckii NCIMB 8052 chromosome, complete genomeL-lactate transport2e-1790.9
NC_015214:1853106:1857751185775118592651515Lactobacillus acidophilus 30SC chromosome, complete genomeL-lactate permease2e-1688.2
NC_003317:1263562:128163112816311282257627Brucella melitensis 16M chromosome I, complete sequenceL-LACTATE PERMEASE3e-1687
NC_013967:2103968:2108017210801721097111695Haloferax volcanii DS2 chromosome, complete genomeGlycolate permease glcA4e-1583.2
NC_015388:2211828:2226795222679522283001506Desulfobacca acetoxidans DSM 11109 chromosome, complete genomeL-lactate permease3e-1377
NC_006138:2341975:2366958236695823687181761Desulfotalea psychrophila LSv54, complete genomeL-lactate permease2e-1274.7
NC_017068:2786391:2801359280135928028971539Selenomonas ruminantium subsp. lactilytica TAM6421, completeputative L-lactate permease5e-1169.7
NC_014532:3596097:363482136348213635567747Halomonas elongata DSM 2581, complete genometransport protein (homolog to lactate permease)7e-1169.3
NC_014210:397922:4001724001724020041833Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,L-lactate transport9e-1168.9
NC_019974:3083899:3093813309381330955341722Natronococcus occultus SP4, complete genomeL-lactate permease9e-1065.5
NC_019792:3446895:3488561348856134903301770Natronobacterium gregoryi SP2 chromosome, complete genomeL-lactate permease6e-0962.8
NC_015930:1397524:1398668139866814002781611Lactococcus garvieae ATCC 49156, complete genomeL-lactate transporter protein2e-0860.8
NC_004193:375416:3925683925683941571590Oceanobacillus iheyensis HTE831, complete genomeL-lactate permease7e-0859.3
NC_010337:2950500:2968260296826029698281569Heliobacterium modesticaldum Ice1, complete genomel-lactate permease family protein, putative1e-0655.1