Pre_GI: BLASTP Hits

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Query: NC_004605:1385444:1418677 Vibrio parahaemolyticus RIMD 2210633 chromosome II, complete

Start: 1418677, End: 1419228, Length: 552

Host Lineage: Vibrio parahaemolyticus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a clinical strain isolated in 1996 in Osaka, Japan. It contains a type III secretion system which may enable colonization and penetration of the host intestinal epithelial layer, and possibly lead to septicemia. The genome contains multipe chromosomal rearrangements as compared to Vibrio cholerae. The organism also produces a hemolysin (thermostable direct hemolysin - TDH) that is particular to Vibrio parahaemolyticus. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. This species causes food poisoning (gastroenteritis) in countries that have elevated levels of seafood consumption such as Japan.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015224:1067390:108967810896781090337660Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,transcriptional regulator, CadC5e-1063.9
NC_008800:3642679:365260736526073653266660Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,reguatory protein7e-1063.5
NC_015424:525039:5367155367155379501236Aeromonas veronii B565 chromosome, complete genometranscriptional regulatory protein, C terminal protein2e-0962
NC_009708:1131500:115250211525021153161660Yersinia pseudotuberculosis IP 31758 chromosome, complete genometranscriptional regulator9e-0960.1
NC_010634:3509880:351878135187813519440660Yersinia pseudotuberculosis PB1/+, complete genometranscriptional regulator, CadC8e-0960.1
NC_006155:3596120:360502136050213605680660Yersinia pseudotuberculosis IP 32953, complete genomeputative regulatory membrane protein.8e-0960.1
NC_010465:1118147:114095811409581141710753Yersinia pseudotuberculosis YPIII, complete genometranscriptional regulator, CadC7e-0960.1
NC_010159:3448490:345833334583333459049717Yersinia pestis Angola, complete genome9e-0959.7
NC_003143:875367:884191884191884907717Yersinia pestis CO92, complete genomeputative regulatory membrane protein9e-0959.7
NC_008149:3373229:338205333820533382769717Yersinia pestis Nepal516, complete genomeregulatory membrane protein9e-0959.7
NC_014029:1146900:116901011690101169726717Yersinia pestis Z176003 chromosome, complete genomeputative regulatory membrane protein9e-0959.7
NC_017154:1089044:111115511111551111871717Yersinia pestis D106004 chromosome, complete genomeputative regulatory membrane protein9e-0959.7
NC_017160:1092839:111382711138271114543717Yersinia pestis D182038 chromosome, complete genomeputative regulatory membrane protein9e-0959.7
NC_017168:199381:220375220375221091717Yersinia pestis A1122 chromosome, complete genomeputative regulatory membrane protein9e-0959.7
NC_017265:1000342:102245510224551023171717Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,putative regulatory membrane protein9e-0959.7
NC_008570:546736:559449559449560009561Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genometranscriptional regulatory protein, C terminal1e-0859.3
NC_008150:513783:535893535893536642750Yersinia pestis Antiqua, complete genomeputative regulatory membrane protein1e-0859.3
NC_004088:3505383:351420735142073514911705Yersinia pestis KIM, complete genomehypothetical protein2e-0858.9
NC_009348:4011160:402346340234634024095633Aeromonas salmonicida subsp. salmonicida A449, complete genometwo-component response regulator3e-0858.2
NC_015172:951550:973277973277973963687Syntrophobotulus glycolicus DSM 8271 chromosome, complete genometwo component transcriptional regulator, winged helix family2e-0755.8
NC_004605:1385444:140715514071551407916762Vibrio parahaemolyticus RIMD 2210633 chromosome II, completeputative transcriptional regulator ToxR4e-0754.3
NC_011744:688000:699090699090699815726Vibrio splendidus LGP32 chromosome 2, complete genomeTranscription activator ToxR7e-0753.5