Pre_GI: BLASTP Hits

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Query: NC_004578:20738:52403 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 52403, End: 54493, Length: 2091

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017986:1885613:1906432190643219084021971Pseudomonas putida ND6 chromosome, complete genomehypothetical protein9e-130464
NC_007794:262402:2741812741812760761896Novosphingobium aromaticivorans DSM 12444, complete genomeprotein of unknown function DUF1524 RloF8e-86318
NC_008740:1459747:1482548148254814844731926Marinobacter aquaeolei VT8, complete genomeprotein of unknown function DUF1524 RloF8e-72272
NC_011757:3486283:3495023349502334968881866Methylobacterium chloromethanicum CM4, complete genomeprotein of unknown function DUF2628e-66252
NC_008563:2909945:2918794291879429206081815Escherichia coli APEC O1, complete genomehypothetical protein3e-51204
NC_007946:2894793:2903828290382829057171890Escherichia coli UTI89, complete genomehypothetical protein5e-51203
NC_013441:382597:4003494003494027062358Gordonia bronchialis DSM 43247, complete genomeprotein of unknown function DUF2624e-51203
NC_011742:2823000:2836105283610528380541950Escherichia coli S88 chromosome, complete genomehypothetical protein3e-51203
NC_008699:1132790:1164146116414611663262181Nocardioides sp. JS614, complete genomeprotein of unknown function DUF1524 RloF1e-38161
NC_013595:8603188:8615007861500786175352529Streptosporangium roseum DSM 43021, complete genomehypothetical protein7e-31135
NC_013235:508585:5189695189695207981830Nakamurella multipartita DSM 44233, complete genomeprotein of unknown function DUF2623e-30134
NC_012489:4336790:4376232437623243778931662Gemmatimonas aurantiaca T-27, complete genomehypothetical protein8e-26119
NC_014256:683384:7059237059237079862064Helicobacter pylori B8 chromosome, complete genomehypothetical protein2e-25117
NC_015635:3860570:3879545387954538816292085Microlunatus phosphovorus NM-1, complete genomehypothetical protein8e-25115
NC_010468:4059436:4072713407271340748062094Escherichia coli ATCC 8739, complete genomeprotein of unknown function DUF2622e-24114
NC_014314:1230687:1241852124185212448963045Dehalogenimonas lykanthroporepellens BL-DC-9 chromosome, complete2e-23111
NC_010831:1224000:1238801123880112408642064Chlorobium phaeobacteroides BS1, complete genomeprotein of unknown function DUF2624e-21103
NC_013062:1141865:1156597115659711591042508Flavobacteriaceae bacterium 3519-10, complete genomeProtein of unknown function DUF262/DUF1524 RloF2e-20101
NC_014169:1099024:1133156113315611356332478Bifidobacterium longum subsp. longum JDM301 chromosome, completehypothetical protein9e-2099.4
NC_014363:1902868:1908007190800719100792073Olsenella uli DSM 7084 chromosome, complete genomeprotein of unknown function DUF2623e-1997.4
NC_009253:529494:5481725481725501421971Desulfotomaculum reducens MI-1 chromosome, complete genomehypothetical protein1e-1895.5
NC_014638:1043854:1064085106408510659801896Bifidobacterium bifidum PRL2010 chromosome, complete genomehypothetical protein1e-1895.1
NC_017360:1052473:1076927107692710791012175Helicobacter pylori 35A chromosome, complete genomehypothetical protein DUF2623e-1894.4
NC_008529:1042220:1059981105998110624942514Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365, completehypothetical protein3e-1894.4
NC_013165:329185:3698533698533719252073Slackia heliotrinireducens DSM 20476, complete genomehypothetical protein4e-1894
NC_013410:1591500:1597040159704015992652226Fibrobacter succinogenes subsp. succinogenes S85 chromosome,hypothetical protein4e-1894
NC_014253:1163783:1184823118482311868322010Methanohalobium evestigatum Z-7303 chromosome, complete genomehypothetical protein1e-1792.4
NC_004557:691944:7094797094797115542076Clostridium tetani E88, complete genomehypothetical protein2e-1791.7
NC_014391:3445672:3455832345583234583692538Micromonospora aurantiaca ATCC 27029 chromosome, complete genomehypothetical protein2e-1791.3
NC_012778:1573847:1580679158067915832132535Eubacterium eligens ATCC 27750, complete genomehypothetical protein4e-1790.5
NC_008212:1386834:1395026139502613960331008Haloquadratum walsbyi DSM 16790, complete genomehypothetical protein8e-1789.4
NC_017063:775337:7943957943957965452151Helicobacter pylori ELS37 chromosome, complete genomehypothetical protein2e-1688.6
NC_017278:258921:2731782731782750551878Thermus sp. CCB_US3_UF1 chromosome, complete genomehypothetical protein1e-1585.5
NC_009342:589741:5950335950335977742742Corynebacterium glutamicum R chromosome, complete genomehypothetical protein1e-1585.5
NC_015577:1392390:1404933140493314069842052Treponema azotonutricium ZAS-9 chromosome, complete genomehypothetical protein4e-1480.5
NC_015161:1556766:1577099157709915800292931Deinococcus proteolyticus MRP chromosome, complete genomehypothetical protein7e-1479.7
NC_011958:976500:9924279924279944842058Rhodobacter sphaeroides KD131 chromosome 2, complete genomehypothetical protein2e-1378.6
NC_013510:170199:1894511894511910311581Thermomonospora curvata DSM 43183, complete genomeprotein of unknown function DUF2622e-1274.7
NC_014659:1731121:1731121173112117338922772Rhodococcus equi 103S, complete genomehypothetical protein1e-1172.4
NC_003450:747000:7583617583617607962436Corynebacterium glutamicum ATCC 13032, complete genomehypothetical protein5e-1170.1
NC_006958:748500:7598347598347622692436Corynebacterium glutamicum ATCC 13032, complete genomehypothetical protein5e-1170.1
NC_010617:2626000:2635004263500426374422439Kocuria rhizophila DC2201, complete genomehypothetical protein2e-1067.8
NC_015635:3860570:387786838778683878224357Microlunatus phosphovorus NM-1, complete genomehypothetical protein1e-0965.5
NC_010628:3675128:368088036808803681626747Nostoc punctiforme PCC 73102, complete genomeprotein of unknown function DUF1524 RloF3e-0861.2
NC_008212:1386834:139606113960611396723663Haloquadratum walsbyi DSM 16790, complete genomehypothetical protein1e-0655.5