Pre_GI: BLASTP Hits

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Query: NC_004547:667988:688832 Erwinia carotovora subsp. atroseptica SCRI1043, complete genome

Start: 688832, End: 689677, Length: 846

Host Lineage: Pectobacterium atrosepticum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (ATCC BAA-672) is a virulent blackleg isolated from the stem of a potato plant. Causative agent for blackleg and soft rot disease in potatoes. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Both Pectobacterium chrysanthemia and Pectobacterium carotovora cause soft-rot diseases of various plant hosts through degradation of the plant cell walls. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium. Pectobacterium atrosepticum is an environmentally widespread organism that causes blackleg and soft rot disease in potatoes. This organism produces pectolytic enzymes that destroy plant tissue and allow the bacteria to spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_005773:5310339:532689853268985327734837Pseudomonas syringae pv. phaseolicola 1448A, complete genometranscriptional regulator, AraC family1e-80299
NC_016816:2925459:292545929254592926304846Pantoea ananatis LMG 5342, complete genomeAraC family transcriptional regulator1e-63243
NC_020260:2725201:273201127320112732829819Cronobacter sakazakii Sp291, complete genomeAraC family transcriptional regulator2e-31135
NC_013850:3340882:336885833688583369664807Klebsiella variicola At-22 chromosome, complete genomeAraC protein arabinose-binding/dimerization5e-29128
NC_016830:1645879:166343616634361664242807Pseudomonas fluorescens F113 chromosome, complete genomearaC family transcriptional regulator2e-26119
NC_010557:679656:702640702640703509870Burkholderia ambifaria MC40-6 chromosome 3, complete sequencetranscriptional regulator, AraC family9e-24110
NC_008392:1029134:103421010342101034986777Burkholderia cepacia AMMD chromosome 3, complete sequencetranscriptional regulator, AraC family4e-23108
NC_009654:4624459:463007746300774630919843Marinomonas sp. MWYL1, complete genomeAraC family transcriptional regulator2e-21103
NC_015733:2194676:220721222072122208114903Pseudomonas putida S16 chromosome, complete genomeAraC family transcriptional regulator6e-21101
NC_004129:5723787:575189957518995752744846Pseudomonas fluorescens Pf-5, complete genometranscriptional regulator, AraC family2e-1996.3
NC_008751:607209:607209607209608048840Desulfovibrio vulgaris subsp. vulgaris DP4, complete genometranscriptional regulator, AraC family2e-1893.2
NC_015559:3511231:351357435135743514419846Marinomonas posidonica IVIA-Po-181 chromosome, complete genomeAraC family transcriptional regulator3e-1892.4
NC_009092:1684467:168524516852451686084840Shewanella loihica PV-4, complete genometranscriptional regulator, AraC family2e-1789.7
NC_013131:7437831:744729274472927448035744Catenulispora acidiphila DSM 44928, complete genometranscriptional regulator, AraC family2e-1789.7
NC_003155:4906639:492314449231444923956813Streptomyces avermitilis MA-4680, complete genomeAraC-family transcriptional regulator8e-1787.8
NC_016944:168530:197883197883198695813Vibrio cholerae IEC224 chromosome I, complete sequenceAraC/XylS family transcriptional regulator2e-1686.3
NC_002505:168532:197873197873198685813Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, completetranscriptional regulator, AraC/XylS family2e-1686.3
NC_014844:762794:781918781918782757840Desulfovibrio aespoeensis Aspo-2 chromosome, complete genomeAraC type helix-turn-helix- domain-containing protein2e-1686.3
NC_016445:2593800:262314126231412623944804Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completeAraC/XylS family transcriptional regulator3e-1685.9
NC_020291:552104:571737571737572579843Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genometranscriptional regulator, AraC family3e-1685.9
NC_003888:4613000:461515446151544615969816Streptomyces coelicolor A3(2), complete genomeAraC-family transcriptional regulator4e-1685.5
NC_010002:3357752:337748733774873378314828Delftia acidovorans SPH-1, complete genometranscriptional regulator, AraC family7e-1684.7
NC_015957:7249873:725992672599267260753828Streptomyces violaceusniger Tu 4113 chromosome, complete genomeAraC family transcriptional regulator1e-1584
NC_015410:2505168:251160125116012512404804Pseudomonas mendocina NK-01 chromosome, complete genomeAraC family transcriptional regulator3e-1582.4
NC_010681:1234500:125237712523771253267891Burkholderia phytofirmans PsJN chromosome 1, complete sequencetranscriptional regulator, AraC family4e-1582
NC_016047:345491:350438350438351265828Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completeAraC/XylS family transcriptional regulator1e-1480.9
NC_016002:1326500:134962213496221350446825Pseudogulbenkiania sp. NH8B, complete genomeAraC family transcriptional regulator1e-1480.9
NC_012881:1062629:106437510643751065232858Desulfovibrio salexigens DSM 2638, complete genometranscriptional regulator, AraC family3e-1479
NC_014624:2569604:257139625713962572262867Eubacterium limosum KIST612 chromosome, complete genomehypothetical protein5e-1478.6
NC_016935:3103430:311173231117323112508777Paenibacillus mucilaginosus 3016 chromosome, complete genomeAraC family transcriptional regulator2e-1376.3
NC_015690:2553837:256220525622052562981777Paenibacillus mucilaginosus KNP414 chromosome, complete genomeAraC protein, arabinose-binding/dimerization2e-1376.3
NC_015589:38418:583045830459131828Desulfotomaculum ruminis DSM 2154 chromosome, complete genomehelix-turn-helix- domain-containing protein AraC type3e-1375.9
NC_016633:541559:555866555866556687822Sphaerochaeta pleomorpha str. Grapes chromosome, complete genomeDNA-binding domain-containing protein3e-1272.4
NC_010552:1212000:123064912306491231497849Burkholderia ambifaria MC40-6 chromosome 2, complete sequencetranscriptional regulator, AraC family3e-1272.4
NC_013956:595320:620403620403621197795Pantoea ananatis LMG 20103 chromosome, complete genomeAda1e-1170.9
NC_015977:2280834:228921522892152290015801Roseburia hominis A2-183 chromosome, complete genometwo-component system response regulator YesN2e-1170.1
NC_010501:3013103:301614130161413016962822Pseudomonas putida W619, complete genometranscriptional regulator, AraC family8e-1064.3
NC_009436:2056000:206845420684542069380927Enterobacter sp. 638, complete genomeAraC family transcriptional regulator7e-0961.2
NC_016078:3130573:313408031340803134979900Pelagibacterium halotolerans B2 chromosome, complete genomeAraC family transcriptional regulator8e-0961.2
NC_019896:3491000:349679234967923497667876Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completehypothetical protein1e-0860.5
NC_014976:2735423:275102427510242751899876Bacillus subtilis BSn5 chromosome, complete genomeputative AraC/XylS family transcriptional regulator1e-0860.5
NC_006322:203932:227318227318227626309Bacillus licheniformis ATCC 14580, complete genomeYbfI11e-0860.5
NC_016078:3130573:313274431327443133640897Pelagibacterium halotolerans B2 chromosome, complete genomeAraC family transcriptional regulator2e-0860.1
NC_020244:516993:539747539747540634888Bacillus subtilis XF-1, complete genomeputative transcriptional regulator2e-0859.7
NC_002947:3404000:340862234086223409431810Pseudomonas putida KT2440, complete genometranscriptional regulator, AraC family5e-0858.5
NC_020272:3396800:341761834176183418514897Bacillus amyloliquefaciens IT-45, complete genomeL-rhamnose operon transcriptional regulator RhaS1e-0757.4
NC_017195:517344:538421538421539302882Bacillus subtilis subsp. subtilis str. RO-NN-1 chromosome, completetranscriptional regulator1e-0757
NC_015977:3215770:321577032157703216591822Roseburia hominis A2-183 chromosome, complete genomeAraC family transcriptional regulator2e-0756.6
NC_017986:5509569:551342855134285514114687Pseudomonas putida ND6 chromosome, complete genomeAraC family transcriptional regulator2e-0756.6
NC_004547:843475:846356846356847111756Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeAraC-family transcriptional regulator2e-0756.2
NC_009348:2362163:238571223857122386632921Aeromonas salmonicida subsp. salmonicida A449, complete genomeAraC family transcriptional regulator4e-0755.8
NC_016818:3887000:392219039221903922996807Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completeDNA-binding domain-containing protein4e-0755.5
NC_020064:2299950:230477223047722305650879Serratia marcescens FGI94, complete genometranscriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain9e-0754.3
NC_013729:2157785:216172921617292162526798Kribbella flavida DSM 17836, complete genometranscriptional regulator, AraC family1e-0654.3
NC_015723:430165:445557445557446420864Cupriavidus necator N-1 chromosome 2, complete sequencetranscriptional regulator1e-0654.3
NC_015723:280368:291558291558292412855Cupriavidus necator N-1 chromosome 2, complete sequenceAraC family transcriptional regulator3e-0652.4
NC_007952:1587500:1599684159968416007661083Burkholderia xenovorans LB400 chromosome 2, complete sequencetranscriptional regulator, AraC family4e-0652.4