Pre_GI: BLASTP Hits

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Query: NC_004547:3817656:3828371 Erwinia carotovora subsp. atroseptica SCRI1043, complete genome

Start: 3828371, End: 3828715, Length: 345

Host Lineage: Pectobacterium atrosepticum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (ATCC BAA-672) is a virulent blackleg isolated from the stem of a potato plant. Causative agent for blackleg and soft rot disease in potatoes. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Both Pectobacterium chrysanthemia and Pectobacterium carotovora cause soft-rot diseases of various plant hosts through degradation of the plant cell walls. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium. Pectobacterium atrosepticum is an environmentally widespread organism that causes blackleg and soft rot disease in potatoes. This organism produces pectolytic enzymes that destroy plant tissue and allow the bacteria to spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004547:3817656:382144138214413821785345Erwinia carotovora subsp. atroseptica SCRI1043, complete genomehypothetical protein3e-49193
NC_004547:3207776:321253032125303212853324Erwinia carotovora subsp. atroseptica SCRI1043, complete genomehypothetical protein2e-31134
NC_006155:4302826:430609543060954306448354Yersinia pseudotuberculosis IP 32953, complete genomehypothetical protein1e-1995.5
NC_010465:429095:447924447924448286363Yersinia pseudotuberculosis YPIII, complete genomeDomain of unknown function DUF1813, HSP20-like protein3e-1994
NC_014228:2883500:288409528840952884433339Xenorhabdus nematophila ATCC 19061, complete genomehypothetical protein7e-1992.4
NC_013592:1424560:143514414351441435287144Dickeya dadantii Ech586, complete genomehypothetical protein6e-1063.2
NC_015566:4662171:467680646768064677126321Serratia sp. AS12 chromosome, complete genomehypothetical protein6e-0752.8
NC_003143:4006884:402504040250404025231192Yersinia pestis CO92, complete genomehypothetical protein1e-0652
NC_004088:266543:278074278074278265192Yersinia pestis KIM, complete genomehypothetical protein1e-0652
NC_005810:4469156:448088144808814481072192Yersinia pestis biovar Microtus str. 91001, complete genomehypothetical protein1e-0652
NC_009381:222735:240870240870241061192Yersinia pestis Pestoides F chromosome, complete genomehypothetical protein1e-0652
NC_017168:1631052:164920816492081649399192Yersinia pestis A1122 chromosome, complete genomehypothetical protein1e-0652
NC_017265:4265659:426900742690074269198192Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,hypothetical protein1e-0652
NC_008149:4053363:406489540648954065086192Yersinia pestis Nepal516, complete genomehypothetical protein1e-0652