Pre_GI: BLASTP Hits

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Query: NC_004432:1310322:1331694 Mycoplasma penetrans HF-2, complete genome

Start: 1331694, End: 1332524, Length: 831

Host Lineage: Mycoplasma penetrans; Mycoplasma; Mycoplasmataceae; Mycoplasmatales; Tenericutes; Bacteria

General Information: This strain has been isolated from the tracheal aspirate of a previously healthy HIV-negative patient with severe respiratory symptoms caused by this infection. Causes urogenital and respiratory disease. This genus currently comprises more than 120 obligate parasitic species found in a wide spectrum of hosts, including humans, animals, insects and plants. The primary habitats of human and animal mycoplasmas are mucous membranes of the respiratory and urogenital tracts, eyes, mammary glands and the joints. Infection that proceeds through attachment of the bacteria to the host cell via specialized surface proteins, adhesins, and subsequent invasion, results in prolonged intracellular persistence that may cause lethality. Once detected in association with their eukaryotic host tissue, most mycoplasmas can be cultivated in the absence of a host if their extremely fastidious growth requirements are met. The latter is one of the major traits that puts them in the separate taxonomic group of microorganisms, class Mollicutes. The cell membrane is rich in protein components (up to two thirds of the membrane mass) that largely consists of highly structurally adaptive lipoproteins employed in invading the host immune system, attachment to the host cells, and pathogenic invasion. Cell division proceeds via normal binary fission or via elongation of a parental cell to form multinucleated filaments and the subsequent breakup to form coccoid bodies.Mycoplasmas carry the smallest genomes of self-replicating cells (less than 500 recognizable coding regions), which is one of the reasons they were among the first microorganisms selected for the genome-sequencing projects. During their evolution, mycoplasmas appear to have lost all of the genes involved in amino acid and cofactor biosynthesis, synthesis of the cell wall and lipid metabolism, resulting in a requirement for the full spectrum of substrates and cofactors taken up from the host or from the complex artificial culture medium. They have lost a number of genes involved in cellular processes, such as cell division, heat shock response, regulatory genes, the two-component signal transduction systems, histidine protein kinases or their target response regulators, and most transcription factors. The majority of mycoplasmas are deficient in genes coding for components of intermediary and energy metabolism and thus are dependent mostly on glycolysis as an ATP-generating pathway. This organism infects humans in the urogenital and respiratory tracts though invasion of tissues. The disease is mainly associated with HIV-1 infection, particularly in the homosexual population, and is very persistent and believed to contribute to the deterioration of the immune system during HIV. Mycoplasma penetrans infection has also been suggested to be a primary cause of some forms of human urethritis and respiratory disease in non-HIV individuals.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009009:540992:5475645475645489611398Streptococcus sanguinis SK36, complete genomeCof family protein, putative4e-21102
NC_017353:2353665:236691223669122367781870Staphylococcus lugdunensis N920143, complete genomeputative haloacid dehalogenase-like hydrolase6e-21101
NC_013893:2373730:238939823893982390267870Staphylococcus lugdunensis HKU09-01 chromosome, complete genomeHydrolase (HAD superfamily)6e-21101
NC_002953:588437:592519592519593388870Staphylococcus aureus subsp. aureus MSSA476, complete genomeputative haloacid dehalogenase-like hydrolase7e-21101
NC_003923:591000:593888593888594757870Staphylococcus aureus subsp. aureus MW2, complete genomehypothetical protein7e-21101
NC_017337:610000:615526615526616395870Staphylococcus aureus subsp. aureus ED133 chromosome, completehaloacid dehalogenase-like family hydrolase1e-20100
NC_002951:623461:630693630693631562870Staphylococcus aureus subsp. aureus COL, complete genomehydrolase, haloacid dehalogenase-like family1e-20100
NC_007795:541783:545864545864546733870Staphylococcus aureus subsp. aureus NCTC 8325, complete genomehypothetical protein1e-20100
NC_010079:607000:609802609802610671870Staphylococcus aureus subsp. aureus USA300_TCH1516, completehydrolase1e-20100
NC_007793:606500:609260609260610129870Staphylococcus aureus subsp. aureus USA300, complete genomehydrolase, haloacid dehalogenase-like family1e-20100
NC_009641:597000:599782599782600651870Staphylococcus aureus subsp. aureus str. Newman chromosome,hydrolase, haloacid dehalogenase-like protein1e-20100
NC_016912:541500:545860545860546729870Staphylococcus aureus subsp. aureus VC40 chromosome, completeHAD superfamily hydrolase1e-20100
NC_017347:616000:618799618799619668870Staphylococcus aureus subsp. aureus T0131 chromosome, completeHydrolase, haloacid dehalogenase-like protein1e-20100
NC_002758:622000:627575627575628444870Staphylococcus aureus subsp. aureus Mu50, complete genomehypothetical protein2e-2099.4
NC_002745:597947:603329603329604198870Staphylococcus aureus subsp. aureus N315, complete genomehypothetical protein2e-2099.4
NC_009487:636616:643852643852644721870Staphylococcus aureus subsp. aureus JH9 chromosome, completecof family hydrolase2e-2099.4
NC_009632:640973:643728643728644597870Staphylococcus aureus subsp. aureus JH1 chromosome, completecof family hydrolase2e-2099.4
NC_013450:557109:564342564342565211870Staphylococcus aureus subsp. aureus ED98, complete genomeHAD superfamily hydrolase2e-2099.4
NC_016928:589223:593304593304594173870Staphylococcus aureus subsp. aureus M013 chromosome, completehydrolase2e-2099.4
NC_017343:566000:568857568857569726870Staphylococcus aureus subsp. aureus ECT-R 2, complete genomecof-like hydrolase family protein2e-2099.4
NC_017351:596000:601395601395602264870Staphylococcus aureus subsp. aureus 11819-97 chromosome, completehypothetical protein2e-2099.4
NC_002952:610462:614544614544615413870Staphylococcus aureus subsp. aureus MRSA252, complete genomeputative haloacid dehalogenase-like hydrolase5e-2098.2
NC_017342:2733215:274874327487432749612870Staphylococcus aureus subsp. aureus TCH60 chromosome, completeHAD superfamily hydrolase5e-2098.2
NC_014921:22828:320763207632933858Mycoplasma fermentans M64 chromosome, complete genomehypothetical protein7e-2097.8
NC_007622:567500:571874571874572743870Staphylococcus aureus RF122, complete genomehypothetical protein1e-1997.4
NC_017341:618649:622754622754623599846Staphylococcus aureus subsp. aureus str. JKD6008 chromosome,ABC superfamily ATP binding cassette transporter, ABC protein3e-1995.9
NC_016941:574899:582150582150583019870Staphylococcus aureus subsp. aureus MSHR1132, complete genomeputative haloacid dehalogenase-like hydrolase3e-1892.4
NC_007168:2415361:243531424353142436183870Staphylococcus haemolyticus JCSC1435, complete genomehypothetical protein1e-1790.5
NC_014614:1259236:125923612592361260054819Clostridium sticklandii, complete genomeCof-like hydrolase2e-1686.7
NC_013416:16493:281562815628974819Aggregatibacter actinomycetemcomitans D11S-1, complete genomephosphatase YbhA2e-1480.1
NC_016513:317197:330470330470331288819Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completephosphatase YbhA5e-1478.6
NC_015875:1926981:1942882194288219442731392Streptococcus pseudopneumoniae IS7493 chromosome, complete genomeputative HAD superfamily hydrolase5e-1478.6
NC_010723:3133302:314657531465753147402828Clostridium botulinum E3 str. Alaska E43, complete genomephosphatase YidA6e-1478.2
NC_014751:449001:452844452844453710867Mycoplasma leachii PG50 chromosome, complete genomeCof-like hydrolase2e-1376.6
NC_014364:2904443:290646529064652907304840Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeCof-like hydrolase5e-1375.1
NC_015949:2002752:200507320050732005873801Caldicellulosiruptor lactoaceticus 6A chromosome, complete genomeCof-like hydrolase9e-1374.3
NC_017243:2190000:219896521989652199762798Brachyspira intermedia PWS/A chromosome, complete genomeHydrolase 3, haloacid dehalogenase-like hydrolase9e-1374.3
NC_014915:595569:600890600890601753864Geobacillus sp. Y412MC52 chromosome, complete genomeHAD-superfamily hydrolase, subfamily IIB1e-1273.9
NC_013411:1454465:146094614609461461809864Geobacillus sp. Y412MC61, complete genomeHAD-superfamily hydrolase, subfamily IIB1e-1273.9
NC_010546:981363:985127985127985957831Cyanothece sp. ATCC 51142 chromosome circular, complete sequenceprobable Haloacid dehalogenase-like hydrolase, type 31e-1273.9
NC_013791:2273389:229280422928042293649846Bacillus pseudofirmus OF4 chromosome, complete genomehypothetical protein1e-1273.6
NC_013961:1246454:127445012744501275268819Erwinia amylovora, complete genomeUncharacterized protein MG265 homolog2e-1273.2
NC_013971:1283942:131198013119801312798819Erwinia amylovora ATCC 49946 chromosome, complete genomephosphatase2e-1273.2
NC_007633:446899:450744450744451610867Mycoplasma capricolum subsp. capricolum ATCC 27343, completehydrolase of the HAD superfamily, putative2e-1273.2
NC_013192:469771:492134492134492925792Leptotrichia buccalis DSM 1135, complete genomeCof-like hydrolase4e-1272
NC_019978:1816940:183723118372311838019789Halobacteroides halobius DSM 5150, complete genomeHAD-superfamily hydrolase, subfamily IIB4e-1272
NC_013895:35410:4494544945459731029Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, completeHAD hydrolase, family IIB9e-1270.9
NC_014376:189319:194322194322195155834Clostridium saccharolyticum WM1 chromosome, complete genomeCof-like hydrolase2e-1169.7
NC_008262:1721496:172715317271531727983831Clostridium perfringens SM101, complete genomeHAD hydrolase, IIB family2e-1169.7
NC_017243:2778427:279515727951572795948792Brachyspira intermedia PWS/A chromosome, complete genomehydrolase, HAD superfamily2e-1169.7
NC_012225:1575432:157543215754321576235804Brachyspira hyodysenteriae WA1, complete genomeputative hydrolase4e-1168.9
NC_017095:1927118:194641719464171947253837Fervidobacterium pennivorans DSM 9078 chromosome, complete genomeHAD-superfamily hydrolase4e-1168.9
NC_015577:786155:789315789315790178864Treponema azotonutricium ZAS-9 chromosome, complete genomephosphatase YidA8e-1167.8
NC_015638:23654:405224052241328807Lacinutrix sp. 5H-3-7-4 chromosome, complete genomeCof-like hydrolase1e-1067
NC_006360:518808:517928517928518854927Mycoplasma hyopneumoniae 232, complete genomehypothetical protein1e-1067
NC_014652:666227:667952667952668791840Caldicellulosiruptor hydrothermalis 108 chromosome, completecof-like hydrolase2e-1066.6
NC_014624:1675500:172668917266891727564876Eubacterium limosum KIST612 chromosome, complete genomehypothetical protein4e-1065.5
NC_016641:3173250:317469231746923175489798Paenibacillus terrae HPL-003 chromosome, complete genomecof-like hydrolase5e-1065.1
NC_004432:80780:988539885399674822Mycoplasma penetrans HF-2, complete genomepredicted haloacid dehalogenase-like hydrolase6e-1064.7
NC_014622:1514416:151546515154651516265801Paenibacillus polymyxa SC2 chromosome, complete genomecof-like hydrolase9e-1064.3
NC_012466:1367099:1367099136709913684991401Streptococcus pneumoniae JJA, complete genomeCof family protein/peptidyl-prolyl cis-trans isomerase, cyclophilin type8e-1064.3
NC_011900:1451545:1455235145523514566351401Streptococcus pneumoniae ATCC 700669, complete genomecyclophilin type peptidyl-prolyl cis-trans isomerase protein8e-1064.3
NC_012468:1453763:1453763145376314551631401Streptococcus pneumoniae 70585, complete genomeCof family protein/peptidyl-prolyl cis-trans isomerase, cyclophilin type8e-1064.3
NC_014483:1376500:137765913776591378459801Paenibacillus polymyxa E681 chromosome, complete genomehypothetical protein1e-0963.9
NC_019978:1816940:183801218380121838818807Halobacteroides halobius DSM 5150, complete genomeHAD-superfamily hydrolase, subfamily IIB1e-0963.9
NC_014650:1410790:141282514128251413679855Geobacillus sp. Y4.1MC1 chromosome, complete genomeCof-like hydrolase1e-0963.5
NC_015975:923812:928139928139928945807Lactobacillus ruminis ATCC 27782 chromosome, complete genomehydrolase, HAD superfamily2e-0963.2
NC_012469:1403412:1403412140341214048121401Streptococcus pneumoniae Taiwan19F-14, complete genomeCof family protein/peptidyl-prolyl cis-trans isomerase, cyclophilin type2e-0963.2
NC_015949:2002752:202052120205212021360840Caldicellulosiruptor lactoaceticus 6A chromosome, complete genomeCof-like hydrolase2e-0963.2
NC_017243:517684:537454537454538257804Brachyspira intermedia PWS/A chromosome, complete genomehydrolase2e-0962.8
NC_014652:666227:683550683550684350801Caldicellulosiruptor hydrothermalis 108 chromosome, completecof-like hydrolase3e-0962.8
NC_015496:2279829:228584922858492286667819Krokinobacter diaphorus 4H-3-7-5 chromosome, complete genomeCof-like hydrolase6e-0961.6
NC_019978:1816940:183881818388181839627810Halobacteroides halobius DSM 5150, complete genomeHAD-superfamily hydrolase, subfamily IIB6e-0961.6
NC_008533:1380406:1380406138040613818061401Streptococcus pneumoniae D39, complete genomeCof family protein/peptidyl-prolyl cis-trans isomerase, cyclophilin type5e-0961.6
NC_003098:1372875:1372875137287513742751401Streptococcus pneumoniae R6, complete genomehypothetical protein5e-0961.6
NC_009328:2083386:209483120948312095679849Geobacillus thermodenitrificans NG80-2 chromosome, complete genomehypothetical protein8e-0961.2
NC_020272:1384525:139059713905971391409813Bacillus amyloliquefaciens IT-45, complete genomehypothetical protein1e-0860.8
NC_021175:1291707:131260313126031313415813Streptococcus oligofermentans AS 1.3089, complete genomehypothetical protein1e-0860.5
NC_009725:2517428:253352425335242534336813Bacillus amyloliquefaciens FZB42, complete genomehypothetical protein1e-0860.5
NC_014760:299392:313881313881314750870Mycoplasma bovis PG45 chromosome, complete genomeHAD-superfamily hydrolase, subfamily IIB1e-0860.5
NC_015275:3243689:325114732511473251992846Clostridium lentocellum DSM 5427 chromosome, complete genomeHAD-superfamily hydrolase, subfamily IIB2e-0860.1
NC_015725:670719:6887016887016897441044Mycoplasma bovis Hubei-1 chromosome, complete genomehypothetical protein3e-0859.3
NC_018704:645843:647533647533648324792Amphibacillus xylanus NBRC 15112, complete genomeputative hydrolase4e-0858.5
NC_017191:2514401:252642125264212527233813Bacillus amyloliquefaciens XH7 chromosome, complete genomehypothetical protein5e-0858.5
NC_017188:2512357:252437725243772525189813Bacillus amyloliquefaciens TA208 chromosome, complete genomehypothetical protein5e-0858.5
NC_008532:469888:479842479842480663822Streptococcus thermophilus LMD-9, complete genomePredicted hydrolase of the HAD superfamily5e-0858.5
NC_008261:967973:967973967973968800828Clostridium perfringens ATCC 13124, complete genomeHAD hydrolase, IIB family5e-0858.5
NC_006448:465656:475588475588476445858Streptococcus thermophilus LMG 18311, complete genomehypothetical protein5e-0858.5
NC_015844:3524175:352459535245953525401807Zobellia galactanivorans, complete genomeSugar phosphatase SupH6e-0858.2
NC_015167:2700218:270148127014812702278798Cellulophaga lytica DSM 7489 chromosome, complete genomeCof-like hydrolase1e-0757.4
NC_013171:228356:250441250441251250810Anaerococcus prevotii DSM 20548, complete genomeCof-like hydrolase2e-0756.6
NC_004337:3590323:387580438758043876616813Shigella flexneri 2a str. 301, complete genomehypothetical protein3e-0755.8
NC_014921:688978:6945756945756956481074Mycoplasma fermentans M64 chromosome, complete genomehypothetical protein5e-0755.1
NC_014551:2510000:255783325578332558252420Bacillus amyloliquefaciens DSM 7, complete genomehypothetical protein6e-0755.1
NC_016023:1501553:150505515050551505972918Bacillus coagulans 36D1 chromosome, complete genomeCof-like hydrolase7e-0754.7
NC_012947:2898179:291233529123352913150816Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeCof-like hydrolase6e-0754.7
NC_011601:846358:849698849698850513816Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomehypothetical protein1e-0653.9
NC_014364:1990000:200470020047002005506807Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeCof-like hydrolase1e-0653.9
NC_006156:427358:442357442357443196840Borrelia garinii PBi chromosome linear, complete sequencehydrolase2e-0653.5
NC_009615:1305678:130759013075901308396807Parabacteroides distasonis ATCC 8503 chromosome, complete genomehaloacid dehalogenase3e-0652.4
NC_015634:2933712:295134929513492952215867Bacillus coagulans 2-6 chromosome, complete genomeCof-like hydrolase4e-0652
NC_015602:1143038:114303811430381143853816Lactobacillus kefiranofaciens ZW3 chromosome, complete genomehypothetical protein5e-0652
NC_015224:4314116:431975643197564320553798Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,hypothetical protein8e-0651.2
NC_016641:2700765:270717227071722707951780Paenibacillus terrae HPL-003 chromosome, complete genomehaloacid dehalogenase protein7e-0651.2
NC_008800:4389687:439605343960534396757705Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,hypothetical protein9e-0650.8
NC_004829:346929:377650377650378543894Mycoplasma gallisepticum R, complete genomehypothetical protein9e-0650.8
NC_017179:2539031:256661025666102567431822Clostridium difficile BI1, complete genomehydrolase1e-0550.8
NC_013315:2531019:255859825585982559419822Clostridium difficile CD196 chromosome, complete genomehydrolase1e-0550.8
NC_013316:2623199:263915426391542639975822Clostridium difficile R20291, complete genomeputative hydrolase1e-0550.8