Pre_GI: BLASTP Hits

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Query: NC_004337:3590323:3826604 Shigella flexneri 2a str. 301, complete genome

Start: 3826604, End: 3828799, Length: 2196

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. It is similar to pathogenic Escherichia coli except for the more numerous insertion sequences and contains a virulence plasmid (pCP301). Causes enteric disease. Shigella This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004431:3409389:3461193346119334634722280Escherichia coli CFT073, complete genomeIutA protein01449
NC_011751:3453683:3484292348429234865712280Escherichia coli UMN026 chromosome, complete genomeFerric aerobactin receptor01449
NC_009837:127000:1414451414451436552211Escherichia coli APEC O1 plasmid pAPEC-O1-ColBM, complete sequenceIutA01330
NC_016860:3995445:4014550401455040167482199Salmonella enterica subsp. enterica serovar Typhimurium strAerobactin siderophore ferric receptor protein IutA01328
NC_020063:3690308:3695602369560236978002199Enterobacteriaceae bacterium strain FGI 57, complete genomeTonB-dependent siderophore receptor01277
NC_010634:3762532:3762532376253237647122181Yersinia pseudotuberculosis PB1/+, complete genomeTonB-dependent siderophore receptor0987
NC_006155:3846315:3849460384946038516402181Yersinia pseudotuberculosis IP 32953, complete genomeputative ferric siderophore receptor0987
NC_010465:868402:8876658876658898452181Yersinia pseudotuberculosis YPIII, complete genomeTonB-dependent siderophore receptor0986
NC_009708:853063:8685148685148706942181Yersinia pseudotuberculosis IP 31758 chromosome, complete genomeTonB-dependent siderophore receptor0986
NC_007963:1190847:1192799119279911948952097Chromohalobacter salexigens DSM 3043, complete genomeTonB-dependent receptor8e-124444
NC_008463:4133700:4155789415578941582302442Pseudomonas aeruginosa UCBPP-PA14, complete genomeprobable siderophore receptor3e-81303
NC_002516:1474000:1476384147638414788252442Pseudomonas aeruginosa PAO1, complete genomeprobable siderophore receptor3e-81303
NC_017277:15937:1785317853204082556Synechocystis sp. PCC 6803, complete genomeferric aerobactin receptor7e-73275
NC_017052:15937:1785317853204082556Synechocystis sp. PCC 6803 substr. PCC-N, complete genomeferric aerobactin receptor7e-73275
NC_017039:15937:1785317853204082556Synechocystis sp. PCC 6803 substr. PCC-P, complete genomeferric aerobactin receptor7e-73275
NC_000911:15937:1785317853204082556Synechocystis sp. PCC 6803, complete genomeferric aerobactin receptor7e-73275
NC_013961:3083816:309473430947343095378645Erwinia amylovora, complete genomeFerric aerobactin receptor precursor7e-67255
NC_007484:2045500:2063150206315020652432094Nitrosococcus oceani ATCC 19707, complete genomeTonB-dependent receptor1e-58228
NC_007645:3581114:3581114358111435832372124Hahella chejuensis KCTC 2396, complete genomeOuter membrane receptor protein, mostly Fe transport3e-53210
NC_010995:4460413:4461342446134244634502109Cellvibrio japonicus Ueda107, complete genomeTonB-dependent ferric achromobactin receptor3e-51204
NC_009092:1935281:1940184194018419423162133Shewanella loihica PV-4, complete genomeTonB-dependent receptor1e-48194
NC_014563:19307:3328633286353762091Pantoea vagans C9-1 plasmid pPag2, complete sequenceFerric achromobactin receptor precursor1e-46188
NC_015311:294283:3127053127053148372133Prevotella denticola F0289 chromosome, complete genomeTonB-dependent receptor plug domain-containing protein9e-28125
NC_013961:3083816:309585230958523096115264Erwinia amylovora, complete genomeFerric aerobactin receptor precursor1e-27125
NC_011026:1181940:1197951119795112000862136Chloroherpeton thalassium ATCC 35110, complete genomeTonB-dependent receptor plug2e-1481.6
NC_011026:1181940:1192050119205011943712322Chloroherpeton thalassium ATCC 35110, complete genomeTonB-dependent siderophore receptor7e-1169.7
NC_015177:124000:1401821401821423562175Pedobacter saltans DSM 12145 chromosome, complete genomeTonB-dependent receptor plug2e-1068.2
NC_015144:124500:1427581427581449292172Weeksella virosa DSM 16922 chromosome, complete genomeTonB-dependent receptor plug6e-1066.6
NC_014655:570000:5891865891865913572172Leadbetterella byssophila DSM 17132 chromosome, complete genometonb-dependent receptor plug1e-0862
NC_011059:1391734:1398678139867814007742097Prosthecochloris aestuarii DSM 271, complete genomeTonB-dependent receptor2e-0862
NC_006347:2861498:2882669288266928847952127Bacteroides fragilis YCH46, complete genomeputative TonB-dependent outer membrane protein3e-0860.8
NC_011060:2637893:2647299264729926498092511Pelodictyon phaeoclathratiforme BU-1, complete genomeTonB-dependent receptor3e-0860.8
NC_015682:379373:3793733793733812321860Thermodesulfobacterium sp. OPB45 chromosome, complete genomeTonB-dependent receptor6e-0860.1
NC_016816:1137904:1139079113907911412532175Pantoea ananatis LMG 5342, complete genomeTonB-dependent siderophore receptor7e-0859.7
NC_013956:3273340:3296862329686232990692208Pantoea ananatis LMG 20103 chromosome, complete genomeCirA7e-0859.7
NC_008782:1136732:1149951114995111518311881Acidovorax sp. JS42, complete genomeTonB-dependent receptor1e-0759.3
NC_007951:1042291:1059087105908710609581872Burkholderia xenovorans LB400 chromosome 1, complete sequencePutative outer membrane cobalamin receptor, TonB dependent1e-0758.9
NC_011992:1038985:1052210105221010540901881Acidovorax ebreus TPSY, complete genomeTonB-dependent receptor2e-0758.5
NC_015963:4500:2389923899259922094Enterobacter asburiae LF7a plasmid pENTAS01, complete sequenceTonB-dependent receptor2e-0758.2
NC_015177:1822000:1822932182293218251032172Pedobacter saltans DSM 12145 chromosome, complete genomeTonB-dependent receptor plug3e-0757.8
NC_015222:1492500:1506214150621415080671854Nitrosomonas sp. AL212 chromosome, complete genomeTonB-dependent vitamin B12 receptor3e-0757.8
NC_013520:1936209:1950535195053519525982064Veillonella parvula DSM 2008, complete genomeTonB-dependent receptor4e-0757.4
NC_011296:1039749:1054056105405610562722217Thermodesulfovibrio yellowstonii DSM 11347, complete genomeTonB-dependent receptor5e-0757
NC_015422:1163752:1184048118404811858411794Alicycliphilus denitrificans K601 chromosome, complete genomeTonB-dependent receptor plug5e-0757
NC_014910:3458475:3458475345847534602681794Alicycliphilus denitrificans BC chromosome, complete genometonb-dependent receptor plug8e-0756.2
NC_006347:3082921:3087919308791930900632145Bacteroides fragilis YCH46, complete genomeTonB-dependent receptor2e-0655.1
NC_003228:3143470:3149210314921031513542145Bacteroides fragilis NCTC 9343, complete genomeputative exported TonB-dependent receptor protein2e-0655.1
NC_016776:3181706:3186704318670431888482145Bacteroides fragilis 638R, complete genomeputative exported TonB-dependent receptor protein2e-0655.1
NC_011663:3181579:3188125318812531909322808Shewanella baltica OS223 chromosome, complete genomeTonB-dependent receptor3e-0654.7
NC_006138:3355028:3370153337015333721592007Desulfotalea psychrophila LSv54, complete genomesimilar to TonB dependent outer membrane receptor3e-0654.7
NC_010475:649177:6663436663436683131971Synechococcus sp. PCC 7002, complete genomeiron compound TonB-dependent receptor, putative3e-0654.7
NC_009456:557962:5745905745905766862097Vibrio cholerae O395 chromosome 1, complete sequenceheme transport protein HutA3e-0654.7
NC_012583:683887:6872566872566893522097Vibrio cholerae O395 chromosome chromosome II, complete sequenceheme transport protein HutA3e-0654.7
NC_012667:839318:8430658430658451612097Vibrio cholerae MJ-1236 chromosome 2, complete genomeTonB-dependent heme and hemoglobin receptor HutA3e-0654.7
NC_016624:112919:1316521316521338022151Azospirillum lipoferum 4B plasmid AZO_p5, complete sequenceferrichrome outer membrane transporter3e-0654.3
NC_013961:3083816:309547530954753095633159Erwinia amylovora, complete genomeFerric aerobactin receptor precursor4e-0653.9
NC_006526:1303635:1310721131072113131382418Zymomonas mobilis subsp. mobilis ZM4, complete genomeTonB-dependent receptor5e-0653.9
NC_015500:2866027:2909442290944229114572016Treponema brennaborense DSM 12168 chromosome, complete genomeTonB-dependent receptor plug5e-0653.9
NC_003198:3586000:3601247360124736030911845Salmonella enterica subsp. enterica serovar Typhi str. CT18,vitamin B12 receptor protein5e-0653.5
NC_018145:50237:6013060130625472418Zymomonas mobilis subsp. mobilis ATCC 29191 chromosome, completeTonB-dependent receptor plug5e-0653.5
NC_013520:120214:1347501347501366181869Veillonella parvula DSM 2008, complete genomeTonB-dependent receptor8e-0653.1
NC_015410:1324313:1327313132731313297332421Pseudomonas mendocina NK-01 chromosome, complete genomeTonB-dependent siderophore receptor protein8e-0653.1
NC_011026:2624775:2642802264280226449402139Chloroherpeton thalassium ATCC 35110, complete genomeTonB-dependent receptor plug9e-0652.8
CU928160:4248621:4252870425287042547141845Escherichia coli IAI1 chromosome, complete genomevitamin B12/cobalamin outer membrane transporter1e-0552.8
NC_000913:4159090:4161662416166241635061845Escherichia coli K12, complete genomevitamin B12/cobalamin outer membrane transporter1e-0552.8
NC_010473:4256000:4261359426135942632031845Escherichia coli str. K-12 substr. DH10B, complete genomevitamin B12/cobalamin outer membrane transporter1e-0552.8
NC_010468:4455201:4466591446659144684351845Escherichia coli ATCC 8739, complete genomeTonB-dependent vitamin B12 receptor1e-0552.8