Pre_GI Gene

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Host: NC_007951 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_007951:1042291 Burkholderia xenovorans LB400 chromosome 1, complete sequence

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
10422911042638348hypothetical protein
10429561043330375hypothetical protein
10434681043968501hypothetical proteinBLASTP
104425510454031149Putative transposaseQuickGO ontologyBLASTP
10457581046513756Putative transposaseQuickGO ontologyBLASTP
104758210486521071Putative transposaseQuickGO ontologyBLASTP
10486731048915243hypothetical proteinBLASTP
10490161049477462hypothetical proteinBLASTP
104951810510411524hypothetical proteinBLASTP
10510341051537504hypothetical protein
105151510537042190hypothetical proteinBLASTP
10540251054654630Putative transposaseQuickGO ontologyBLASTP
105464710567252079hypothetical proteinBLASTP
10567461057192447hypothetical proteinBLASTP
10572601057412153hypothetical proteinBLASTP
10573971057645249hypothetical protein
10578641058178315hypothetical proteinBLASTP
10581751058531357hypothetical protein
10587671059012246hypothetical protein
105908710609581872Putative outer membrane cobalamin receptor TonB dependentQuickGO ontologyBLASTP
106108810620981011ABC Fe3-hydroxamatecobalamin transporter inner membrane subunitQuickGO ontologyBLASTP
10620951062934840ABC Fe3-hydroxamatecobalamin transporter ATPase subunitQuickGO ontologyBLASTP
106297110640321062Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferaseQuickGO ontologyBLASTP
10640751064851777Putative cobalamin-5-phosphate synthaseQuickGO ontologyBLASTP
10648361065426591Putative phosphoglyceratebisphosphoglycerate mutaseQuickGO ontologyBLASTP
10654631066374912ABC Fe3-hydroxamatecobalamin transporter periplasmic ligand binding proteinQuickGO ontologyBLASTP
106643310675031071Putative cobalamin biosynthetic protein CobCQuickGO ontologyBLASTP
10675081068443936Cobalamin biosynthesis protein CbiBQuickGO ontologyBLASTP
10684431068997555Putative cobinamide kinaseadenosyl cobinamidephosphate guanylyltransferaseQuickGO ontologyBLASTP