Pre_GI Gene

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Host: NC_009092 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009092:1935281 Shewanella loihica PV-4, complete genome

Host Lineage: Shewanella loihica; Shewanella; Shewanellaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: This strain is an environmental isolate from the Naha Vents, Hawaii, in the Pacific Ocean. Psychrotolerant bacterium. This genus includes species that inhabit a wide range of environments and are capable of utilizing a wide variety of electron acceptors during anaerobic respiration including some insoluble metal oxides while using very few carbon sources such as lactate or acetate. This group of organisms have been studied extensively for their electron transport systems. Shewanella loihica is a psychrotolerant deep sea bacterium. This organism is able to reduce iron, manganese and uranium and may be useful for bioremediation at low temperatures.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
193528119381872907Microbial collagenaseQuickGO ontologyBLASTP
19384971939174678hypothetical proteinBLASTP
19395031940006504hypothetical protein
194018419423162133TonB-dependent receptorQuickGO ontologyBLASTP
19426631943484822hypothetical proteinBLASTP
19444451945332888hypothetical protein
19454211945909489hypothetical protein
19460221946534513hypothetical protein
19465951947542948hypothetical proteinBLASTP
19481451948657513hypothetical protein
19487501949097348hypothetical protein
19497481950644897protein of unknown function DUF6 transmembraneQuickGO ontologyBLASTP
19506961951193498amino acid-binding ACT domain proteinQuickGO ontologyBLASTP
195147319537312259binding-protein-dependent transport systems inner membrane componentQuickGO ontologyBLASTP
195379219554441653phosphate ABC transporter inner membrane subunit PstAQuickGO ontologyBLASTP
19555221956340819phosphate ABC transporter ATPase subunitQuickGO ontologyBLASTP
19563891957090702phosphate uptake regulator PhoUQuickGO ontologyBLASTP
19576021957907306Tetratricopeptide TPR_2 repeat proteinQuickGO ontology
19579501958477528hypothetical protein
19588211959285465hypothetical protein