Pre_GI: BLASTP Hits

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Query: NC_004129:5781413:5782703 Pseudomonas fluorescens Pf-5, complete genome

Start: 5782703, End: 5784448, Length: 1746

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017986:4790482:4816106481610648177731668Pseudomonas putida ND6 chromosome, complete genomeamidohydrolase 34e-71269
NC_009092:1047500:1057371105737110591191749Shewanella loihica PV-4, complete genomeAmidohydrolase 34e-56219
NC_013524:171524:1822641822641839761713Sphaerobacter thermophilus DSM 20745 chromosome 2, complete genomeAmidohydrolase 38e-54211
NC_017249:2109843:2130099213009921317841686Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein3e-53210
NC_011001:2085986:2146425214642521480501626Burkholderia cenocepacia J2315 chromosome 2, complete sequenceputative amidohydrolase9e-53208
NC_011831:1610346:1631230163123016328281599Chloroflexus aggregans DSM 9485, complete genomeAmidohydrolase 35e-52206
NC_015723:2550000:2570566257056625722421677Cupriavidus necator N-1 chromosome 2, complete sequenceamidohydrolase3e-50200
NC_007974:1135863:1137708113770811393901683Ralstonia metallidurans CH34 chromosome 2, complete sequenceAmidohydrolase 32e-49197
NC_017249:2109843:2133816213381621355071692Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein6e-47189
NC_016109:6816000:6837766683776668394061641Kitasatospora setae KM-6054, complete genomeputative peptidase M38 family protein6e-46186
NC_018080:2732962:2750916275091627526581743Pseudomonas aeruginosa DK2 chromosome, complete genomehypothetical protein4e-44179
NC_014364:2904443:2913059291305929146661608Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeAmidohydrolase 33e-43176
NC_009656:2801885:2840830284083028425721743Pseudomonas aeruginosa PA7 chromosome, complete genomehypothetical protein2e-42174
NC_008044:857759:8780168780168796831668Silicibacter sp. TM1040, complete genomeAmidohydrolase 31e-41171
NC_010338:4481356:4481356448135644829901635Caulobacter sp. K31, complete genomeAmidohydrolase 33e-40166
NC_014924:2399524:2424848242484824265721725Pseudoxanthomonas suwonensis 11-1 chromosome, complete genomeAmidohydrolase 32e-39164
NC_007494:27084:3151831518331701653Rhodobacter sphaeroides 2.4.1 chromosome 2, complete sequencePutative metal-dependent hydrolase7e-39162
NC_009050:604950:6093846093846110361653Rhodobacter sphaeroides ATCC 17029 chromosome 2, complete sequenceAmidohydrolase 32e-38160
NC_011958:53426:5637756377580291653Rhodobacter sphaeroides KD131 chromosome 2, complete genomeAmidohydrolase 36e-38159
NC_010184:3213347:3215590321559032172091620Bacillus weihenstephanensis KBAB4, complete genomeAmidohydrolase 36e-38159
NC_020291:5778999:5783451578345157852021752Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeputative TIM-barrel fold metal-dependent hydrolase2e-37157
NC_013204:34782:4104841048426311584Eggerthella lenta DSM 2243, complete genomeAmidohydrolase 35e-37155
NC_014624:1349950:1354311135431113560351725Eubacterium limosum KIST612 chromosome, complete genomeexoenzyme regulatory protein2e-36154
NC_012522:3867167:3889481388948138911871707Rhodococcus opacus B4, complete genomeputative hydrolase5e-35149
NC_009922:944538:9445389445389461421605Alkaliphilus oremlandii OhILAs, complete genomeAmidohydrolase 34e-34146
NC_015957:5310000:5325690532569053273091620Streptomyces violaceusniger Tu 4113 chromosome, complete genomeamidohydrolase 34e-32139
NC_015510:1978539:1999705199970520012611557Haliscomenobacter hydrossis DSM 1100 chromosome, complete genomeAmidohydrolase 39e-32138
NC_014330:195447:2145912145912161771587Brachyspira pilosicoli 95/1000 chromosome, complete genomeamidohydrolase 32e-31137
NC_019908:436000:4421614421614437471587Brachyspira pilosicoli P43/6/78 chromosome, complete genomeamidohydrolase 34e-31136
NC_018607:1505908:1545214154521415468001587Brachyspira pilosicoli B2904 chromosome, complete genomeamidohydrolase9e-31135
NC_015977:2631789:2654238265423826558031566Roseburia hominis A2-183 chromosome, complete genomeamidohydrolase6e-29129
NC_011725:4600000:4604131460413146056991569Bacillus cereus B4264 chromosome, complete genomehypothetical protein7e-29129
NC_011772:4565418:4569412456941245709801569Bacillus cereus G9842, complete genomehypothetical protein2e-28127
NC_021184:2936244:2969732296973229714321701Desulfotomaculum gibsoniae DSM 7213, complete genomeputative TIM-barrel fold metal-dependent hydrolase5e-28126
NC_015733:2658337:2673459267345926751171659Pseudomonas putida S16 chromosome, complete genomeputative periplasmic protein3e-27124
NC_007333:2093167:2093167209316720947861620Thermobifida fusca YX, complete genomehypothetical protein9e-27122
NC_012225:212727:2145972145972161441548Brachyspira hyodysenteriae WA1, complete genomeamidohydrolase 31e-24115
NC_020156:3050423:3064525306452530662341710Nonlabens dokdonensis DSW-6, complete genomeamidohydrolase-like protein2e-24114
NC_012526:2317862:2322070232207023235571488Deinococcus deserti VCD115, complete genomeputative amidohydrolase6e-24112
NC_014012:1097938:1111222111122211129341713Shewanella violacea DSS12, complete genomemetal-dependent hydrolase, putative2e-23110
NC_008942:1706191:1726815172681517284161602Methanocorpusculum labreanum Z, complete genomehypothetical protein5e-23109
NC_007348:2558500:2576872257687225785151644Ralstonia eutropha JMP134 chromosome 2, complete sequenceAmidohydrolase:Amidohydrolase-like6e-23109
NC_008781:1426285:1426285142628514281651881Polaromonas naphthalenivorans CJ2, complete genomeAmidohydrolase 31e-22108
NC_015161:792955:7929557929557944691515Deinococcus proteolyticus MRP chromosome, complete genomeAmidohydrolase 34e-21103
NC_014973:3290545:3316892331689233187031812Geobacter sp. M18 chromosome, complete genomeAmidohydrolase 32e-20101
NC_014931:1044313:1066641106664110686231983Variovorax paradoxus EPS chromosome, complete genomeAmidohydrolase 32e-20101
NC_015566:3269469:3289042328904232909191878Serratia sp. AS12 chromosome, complete genomeAmidohydrolase 37e-2099.4
NC_013093:1213908:1218379121837912199561578Actinosynnema mirum DSM 43827, complete genomeAmidohydrolase 31e-1998.6
NC_015389:809474:8330638330638346341572Coriobacterium glomerans PW2 chromosome, complete genomeAmidohydrolase 31e-1998.2
UCMB5137:2418403:2423962242396224257941833Bacillus atrophaeus UCMB-5137metal-dependent hydrolase1e-1895.5
NC_020126:7686076:7702658770265877043221665Myxococcus stipitatus DSM 14675, complete genomehypothetical protein3e-1894
NC_014639:2452286:2458654245865424604861833Bacillus atrophaeus 1942 chromosome, complete genomemetal-dependent hydrolase2e-1791.3
CP002207:2452286:2458654245865424604861833Bacillus atrophaeus 1942, complete genomemetal-dependent hydrolase2e-1791.3
NC_015593:463477:4698474698474719132067Sphingobium chlorophenolicum L-1 chromosome chromosome 1, completeamidohydrolase2e-1790.9
NC_015723:280368:2988722988723008181947Cupriavidus necator N-1 chromosome 2, complete sequenceamidohydrolase1e-1688.6
NC_010505:5077162:5079761507976150813981638Methylobacterium radiotolerans JCM 2831, complete genomeAmidohydrolase 31e-1585.5
NC_011769:787496:7874967874967891181623Desulfovibrio vulgaris str. 'Miyazaki F', complete genomeAmidohydrolase 31e-1482
NC_009663:2531876:2547976254797625498561881Sulfurovum sp. NBC37-1, complete genomemetal-dependent hydrolase2e-1378.2
NC_009921:4948500:4960385496038549620761692Frankia sp. EAN1pec, complete genomeAmidohydrolase 32e-1377.8
NC_002927:506183:5101635101635118121650Bordetella bronchiseptica RB50, complete genomehypothetical protein7e-1272.8
NC_002928:507749:5117275117275133761650Bordetella parapertussis 12822, complete genomehypothetical protein7e-1169.3
NC_015382:172213:1722131722131740901878Burkholderia gladioli BSR3 plasmid bgla_1p, complete sequenceAmidohydrolase 32e-1067.8
NC_007777:2638580:2650987265098726526331647Frankia sp. CcI3, complete genomeAmidohydrolase 33e-1067.4
NC_014831:2258398:2296032229603222979931962Thermaerobacter marianensis DSM 12885 chromosome, complete genomeAmidohydrolase 34e-1067
NC_009953:2727669:2738129273812927396941566Salinispora arenicola CNS-205 chromosome, complete genomeamidohydrolase 37e-0962.8
NC_013174:1366786:1382767138276713843921626Jonesia denitrificans DSM 20603, complete genomeAmidohydrolase 32e-0861.2
NC_009380:2548878:2558288255828825597841497Salinispora tropica CNB-440 chromosome, complete genomeamidohydrolase 38e-0859.3
NC_008278:4023918:4041168404116840427691602Frankia alni ACN14a, complete genomeconserved hypothetical protein; putative metallo-dependent hydrolase domain2e-0758.2
NC_015138:2110149:2127643212764321295111869Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completeAmidohydrolase 31e-0655.5
NC_020134:2832857:2839385283938528405721188Clostridium stercorarium subsp. stercorarium DSM 8532, completeamidohydrolase4e-0653.5
NC_008536:5192235:5199454519945452006561203Solibacter usitatus Ellin6076, complete genomeimidazolonepropionase4e-0653.5