Pre_GI: BLASTP Hits

Some Help

Query: NC_004129:5481629:5491834 Pseudomonas fluorescens Pf-5, complete genome

Start: 5491834, End: 5493171, Length: 1338

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_021150:3698696:3720275372027537215221248Azotobacter vinelandii CA6, complete genomephage integrase6e-125447
NC_012560:3698697:3720276372027637215231248Azotobacter vinelandii DJ, complete genomephage integrase6e-125447
NC_009656:4527457:4572105457210545733881284Pseudomonas aeruginosa PA7 chromosome, complete genomephage integrase family site specific recombinase2e-122439
NC_008463:4566976:4589452458945245907321281Pseudomonas aeruginosa UCBPP-PA14, complete genomeputative integrase1e-121437
NC_009656:4527457:4657608465760846589571350Pseudomonas aeruginosa PA7 chromosome, complete genomephage integrase family site specific recombinase9e-112404
NC_004578:895019:8995348995349009911458Pseudomonas syringae pv. tomato str. DC3000, complete genome7e-98357
NC_007005:1605000:1607964160796416093701407Pseudomonas syringae pv. syringae B728a, complete genomePhage integrase9e-92337
NC_005773:4282840:4312613431261343141211509Pseudomonas syringae pv. phaseolicola 1448A, complete genomehypothetical protein2e-80299
NC_005773:866157:8716228716228728391218Pseudomonas syringae pv. phaseolicola 1448A, complete genomehypothetical protein5e-79295
NC_007005:830467:8359468359468371091164Pseudomonas syringae pv. syringae B728a, complete genome1e-64247
NC_014532:3596097:3632063363206336330971035Halomonas elongata DSM 2581, complete genomesite-specific recombinase, phage integrase family5e-57222
NC_011149:4677412:467964346796434680569927Salmonella enterica subsp. enterica serovar Agona str. SL483,phage integrase7e-53208
NC_010067:3056774:307494730749473075873927Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein7e-51201
NC_012214:537000:557388557388558347960Erwinia pyrifoliae Ep1/96, complete genomeintegrase1e-44181
NC_013421:701005:744192744192745166975Pectobacterium wasabiae WPP163, complete genomeintegrase family protein1e-44180
NC_016832:4482437:4499858449985845008711014Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Phage integrase2e-44180
NC_003198:4513900:4528781452878145297941014Salmonella enterica subsp. enterica serovar Typhi str. CT18,probable phage integrase2e-44180
NC_004631:4494000:4511590451159045126031014Salmonella enterica subsp. enterica serovar Typhi Ty2, completeprobable phage integrase2e-44180
NC_004547:667988:6873806873806884021023Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeputative phage integrase5e-44179
NC_009832:4482500:4486861448686144878921032Serratia proteamaculans 568, complete genomeintegrase family protein6e-43175
NC_014228:3505320:3510397351039735114131017Xenorhabdus nematophila ATCC 19061, complete genomeputative phage integrase2e-41170
NC_013892:1503162:1513287151328715142941008Xenorhabdus bovienii SS-2004 chromosome, complete genometyrosine recombinase-like3e-41169
NC_016845:4498097:450306445030644503864801Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,Phage integrase8e-41168
NC_014228:3391500:3392691339269133936981008Xenorhabdus nematophila ATCC 19061, complete genomeputative phage integrase2e-40167
NC_009832:4564752:4572097457209745731101014Serratia proteamaculans 568, complete genomeintegrase family protein3e-40166
NC_014029:331919:4017584017584027711014Yersinia pestis Z176003 chromosome, complete genomeintegrase6e-39162
NC_012913:1041969:106300810630081063919912Aggregatibacter aphrophilus NJ8700, complete genomeintegrase4e-39162
NC_009832:426993:4500724500724510851014Serratia proteamaculans 568, complete genomeintegrase family protein4e-39162
NC_010554:2789722:2793999279399927950691071Proteus mirabilis HI4320, complete genomephage integrase9e-33141
NC_011745:3405520:342713034271303427705576Escherichia coli ED1a chromosome, complete genomehypothetical protein1e-30134
NC_010939:1986263:200437920043792004945567Actinobacillus pleuropneumoniae serovar 7 str. AP76, completePutative integrase3e-25116
NC_018691:2214464:221498022149802215912933Alcanivorax dieselolei B5 chromosome, complete genomeTyrosine recombinase xerC-like protein2e-23110
NC_009792:3245368:326544332654433265901459Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein1e-21104
NC_009792:3245368:326593832659383266234297Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein4e-1686.3
NC_006155:3805640:381032338103233810631309Yersinia pseudotuberculosis IP 32953, complete genome5e-1582.8
NC_003143:1059580:106425410642541064562309Yersinia pestis CO92, complete genomeintegrase (partial)5e-1582.8
NC_008149:3556999:356015835601583560406249Yersinia pestis Nepal516, complete genomeintegrase5e-1272.8
NC_012962:3864000:3866446386644638676481203Photorhabdus asymbiotica, complete genomeProbable phage integrase5e-1272.8
NC_007005:830467:837051837051837347297Pseudomonas syringae pv. syringae B728a, complete genome2e-1170.5
NC_015177:2642368:264457726445772645458882Pedobacter saltans DSM 12145 chromosome, complete genomeintegrase family protein4e-1170.1
NC_012660:4734363:474106147410614741222162Pseudomonas fluorescens SBW25 chromosome, complete genome4e-1169.7
NC_014228:3391500:340640634064063406693288Xenorhabdus nematophila ATCC 19061, complete genomehypothetical protein6e-1168.9
NC_013926:614206:629210629210630064855Aciduliprofundum boonei T469 chromosome, complete genomeintegrase family protein2e-1067.4
NC_015638:2045500:205110020511002051990891Lacinutrix sp. 5H-3-7-4 chromosome, complete genomeTyrosine recombinase xerC5e-1066.2
NC_016937:141984:170101170101170979879Francisella tularensis subsp. tularensis TI0902 chromosome,tyrosine recombinase XerD5e-1066.2
NC_016933:141984:170101170101170979879Francisella tularensis TIGB03 chromosome, complete genometyrosine recombinase XerD5e-1066.2
NC_006570:141966:170083170083170961879Francisella tularensis subsp. tularensis Schu 4, complete genomeIntegrase/recombinase5e-1066.2
NC_008245:141982:170099170099170977879Francisella tularensis subsp. tularensis FSC 198, complete genomeIntegrase/recombinase5e-1066.2
NC_009257:226417:254534254534255412879Francisella tularensis subsp. tularensis WY96-3418 chromosome,tyrosine recombinase XerD6e-1065.9
NC_010677:214712:242702242702243580879Francisella tularensis subsp. mediasiatica FSC147, complete genometyrosine recombinase XerD6e-1065.9
NC_019960:260997:272856272856273749894Prevotella dentalis DSM 3688 chromosome 1, complete sequencesite-specific recombinase XerD7e-1065.5
NC_020291:4357425:436516743651674366105939Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genometyrosine recombinase XerC7e-1065.5
NC_013939:1812259:181857918185791819487909Deferribacter desulfuricans SSM1, complete genometyrosine recombinase7e-1065.5
NC_016001:905164:911276911276912172897Flavobacterium branchiophilum, complete genomeTyrosine recombinase XerC7e-0962.4
NC_014205:1257652:1257652125765212586531002Staphylothermus hellenicus DSM 12710 chromosome, complete genomeintegrase family protein7e-0962.4
NC_013792:109203:1100861100861111921107Bacillus pseudofirmus OF4 plasmid pBpOF4-01, complete sequencesite-specific tyrosine recombinase XerS1e-0861.2
NC_012962:3864000:386616338661633866405243Photorhabdus asymbiotica, complete genomeputative integrase-like protein1e-0861.2
NC_021184:4456904:446240944624094463341933Desulfotomaculum gibsoniae DSM 7213, complete genomesite-specific recombinase XerD2e-0861.2
NC_010278:1989500:1989861198986119908711011Actinobacillus pleuropneumoniae serovar 3 str. JL03 chromosome,site-specific tyrosine recombinase XerC2e-0860.8
NC_010939:2085000:208550420855042086424921Actinobacillus pleuropneumoniae serovar 7 str. AP76, completeTyrosine recombinase xerC3e-0860.1
NC_018721:2759700:276193527619352762825891Psychroflexus torquis ATCC 700755 chromosome, complete genometyrosine recombinase XerC6e-0859.3
NC_009053:2025782:2028258202825820292681011Actinobacillus pleuropneumoniae L20, complete genomeTyrosine recombinase xerC6e-0859.3
NC_014314:576465:658834658834659820987Dehalogenimonas lykanthroporepellens BL-DC-9 chromosome, completeintegrase family protein5e-0859.3
NC_005877:864118:866941866941867771831Picrophilus torridus DSM 9790, complete genomeDNA integration/recombination/invertion protein7e-0858.9
NC_009033:1108236:1130981113098111319821002Staphylothermus marinus F1, complete genomephage integrase family protein2e-0757.4
NC_017167:351069:3541843541843551881005Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1hypothetical protein3e-0757
NC_011901:39215:460684606846964897Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completetyrosine recombinase XerC3e-0757
NC_012968:2228943:225078322507832251691909Methylotenera mobilis JLW8, complete genometyrosine recombinase XerD4e-0756.6
NC_015589:3813415:382872038287203829688969Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeintegrase family protein4e-0756.6
NC_011297:1296968:129945012994501300340891Dictyoglomus thermophilum H-6-12, complete genometyrosine recombinase XerD5e-0756.2
NC_014541:4167916:416937741693774170267891Ferrimonas balearica DSM 9799 chromosome, complete genometyrosine recombinase XerC7e-0755.8
NC_014961:50814:7074470744717481005Desulfurococcus mucosus DSM 2162 chromosome, complete genomeintegrase family protein7e-0755.5
NC_004461:921364:929825929825930715891Staphylococcus epidermidis ATCC 12228, complete genomexerC protein1e-0655.1
NC_012881:1802000:183366218336621834585924Desulfovibrio salexigens DSM 2638, complete genomeintegrase family protein2e-0654.3
NC_012416:753500:784436784436785356921Wolbachia sp. wRi, complete genomesite-specific recombinase, phage integrase family2e-0653.9
NC_019815:761480:775648775648776571924Candidatus Kinetoplastibacterium crithidii (ex Angomonas deaneiintegrase/recombinase XerD2e-0653.9
NC_008054:899441:8994418994419005171077Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, completeIntegrase/recombinase3e-0653.9
NC_016510:2426150:246974824697482470641894Flavobacterium columnare ATCC 49512 chromosome, complete genomeintegrase/recombinase XerC3e-0653.5
NC_020064:3825916:384373738437373844636900Serratia marcescens FGI94, complete genometyrosine recombinase XerD4e-0653.1
NC_014844:2056943:205864120586412059582942Desulfovibrio aespoeensis Aspo-2 chromosome, complete genometyrosine recombinase XerC8e-0652
NC_014727:966779:9835549835549846301077Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,site-specific recombinase xerd9e-0652
NC_015666:252740:2654262654262664631038Halopiger xanaduensis SH-6 chromosome, complete genomeintegrase family protein9e-0652