Pre_GI: BLASTP Hits

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Query: NC_004129:4993974:5018206 Pseudomonas fluorescens Pf-5, complete genome

Start: 5018206, End: 5019282, Length: 1077

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014315:2327083:2328012232801223290581047Nitrosococcus watsoni C-113 chromosome, complete genomeaIF-2BI family translation initiation factor2e-71269
NC_011653:466007:4837474837474847871041Thermosipho africanus TCF52B, complete genomemethylthioribose-1-phosphate isomerase2e-67256
NC_014758:1992683:200614420061442007127984Calditerrivibrio nitroreducens DSM 19672 chromosome, completemethylthioribose-1-phosphate isomerase4e-64245
NC_012883:1283529:1305260130526013063241065Thermococcus sibiricus MM 739, complete genomeTranslation initiation factor eIF-2B, beta subunit1e-63243
NC_016584:4860360:4884734488473448857711038Desulfosporosinus orientis DSM 765 chromosome, complete genomeS-methyl-5-thioribose-1-phosphate isomerase1e-61237
NC_015672:2236000:225283822528382253818981Flexistipes sinusarabici DSM 4947 chromosome, complete genomemethylthioribose-1-phosphate isomerase2e-60233
NC_011297:787932:7879327879327889661035Dictyoglomus thermophilum H-6-12, complete genomeinitiation factor 2B alpha/beta/delta5e-60231
NC_011297:767333:7879327879327889661035Dictyoglomus thermophilum H-6-12, complete genomeinitiation factor 2B alpha/beta/delta5e-60231
NC_015757:4680:1070510705117451041Sulfobacillus acidophilus TPY chromosome, complete genometranslation initiation factor, aIF-2BI family4e-58225
NC_007519:64157:6526665266663331068Desulfovibrio alaskensis G20 chromosome, complete genometranslation initiation factor 2B subunit I4e-58225
NC_015958:1516944:1530000153000015310371038Thermoanaerobacter wiegelii Rt8.B1 chromosome, complete genomemethylthioribose-1-phosphate isomerase1e-57223
NC_007503:1383255:1391496139149613925271032Carboxydothermus hydrogenoformans Z-2901, complete genomeputative translation initiation factor, aIF-2BI family2e-57223
NC_005125:182701:1847461847461857921047Gloeobacter violaceus PCC 7421, complete genometranslation initiation factor IF-2B subunit alpha2e-57223
NC_009699:1400000:1418441141844114194901050Clostridium botulinum F str. Langeland chromosome, complete genomemethylthioribose-1-phosphate isomerase8e-57221
NC_017297:1402349:1418734141873414197831050Clostridium botulinum F str. 230613 chromosome, complete genomeS-methyl-5-thioribose-1-phosphate isomerase8e-57221
NC_012563:1464000:1482590148259014836391050Clostridium botulinum A2 str. Kyoto, complete genomeS-methyl-5-thioribose-1-phosphate isomerase8e-57221
NC_009495:1368000:1384793138479313858421050Clostridium botulinum A str. ATCC 3502 chromosome, complete genomemethylthioribose-1-phosphate isomerase7e-57221
NC_009697:1336889:1353413135341313544621050Clostridium botulinum A str. ATCC 19397 chromosome, completemethylthioribose-1-phosphate isomerase7e-57221
NC_009698:1337383:1353907135390713549561050Clostridium botulinum A str. Hall chromosome, complete genomemethylthioribose-1-phosphate isomerase7e-57221
NC_010516:1382000:1400504140050414015531050Clostridium botulinum B1 str. Okra, complete genomeS-methyl-5-thioribose-1-phosphate isomerase7e-57221
NC_015873:1901939:1903208190320819042541047Megasphaera elsdenii DSM 20460, complete genomeS-methyl-5-thioribose-1-phosphate isomerase7e-57221
NC_013887:1668913:166891316689131669902990Methanocaldococcus sp. FS406-22 chromosome, complete genometranslation initiation factor, aIF-2BI family1e-56220
NC_000909:404961:405290405290406279990Methanocaldococcus jannaschii DSM 2661, complete genometranslation initiation factor aIF-2B, subunit delta (aIF2BD)2e-56219
NC_013156:633475:653372653372654364993Methanocaldococcus fervens AG86, complete genometranslation initiation factor, aIF-2BI family1e-55217
NC_010520:1427981:1447142144714214481911050Clostridium botulinum A3 str. Loch Maree, complete genomeS-methyl-5-thioribose-1-phosphate isomerase2e-54213
NC_007513:1764739:1770880177088017718871008Synechococcus sp. CC9902, complete genomeInitiation factor 2B alpha/beta/delta7e-54211
NC_011899:1969187:1972516197251619735831068Halothermothrix orenii H 168, complete genomeputative translation initiation factor, aIF-2BI family7e-53207
NC_005877:284829:2963862963862974021017Picrophilus torridus DSM 9790, complete genometranslation initiation factor IF-2B subunit alpha3e-52205
NC_003106:883174:8960248960248971121089Sulfolobus tokodaii str. 7, complete genometranslation initiation factor IF-2B subunit alpha7e-52204
NC_003364:402268:4121774121774132771101Pyrobaculum aerophilum str. IM2, complete genometranslation initiation factor IF-2B subunit alpha1e-48193
NC_009440:2151638:2171018217101821720671050Metallosphaera sedula DSM 5348 chromosome, complete genometranslation initiation factor 2B subunit I3e-48192
NC_015389:616430:6651216651216662211101Coriobacterium glomerans PW2 chromosome, complete genomemethylthioribose-1-phosphate isomerase5e-48191
NC_011766:1106739:1134712113471211357851074Desulfurococcus kamchatkensis 1221n chromosome, complete genometranslation initiation factor, aIF-2B alpha subunit-related1e-47190
NC_016885:2091918:2158044215804421591441101Pyrobaculum oguniense TE7 chromosome, complete genomeS-methyl-5-thioribose-1-phosphate isomerase2e-47190
NC_020304:1977249:1981241198124119823411101Desulfocapsa sulfexigens DSM 10523, complete genomeS-methyl-5-thioribose-1-phosphate isomerase6e-47188
NC_009376:1:5541554165961056Pyrobaculum arsenaticum DSM 13514 chromosome, complete genometranslation initiation factor IF-25e-47188
NC_015574:1676798:167992716799271680871945Methanobacterium sp. SWAN-1 chromosome, complete genomemethylthioribose-1-phosphate isomerase1e-46187
NC_016645:1838405:1860293186029318613931101Pyrobaculum sp. 1860 chromosome, complete genometranslation initiation factor IF-22e-46186
NC_008942:960306:9754109754109764261017Methanocorpusculum labreanum Z, complete genomehypothetical protein3e-46186
NC_015216:652266:664432664432665376945Methanobacterium sp. AL-21 chromosome, complete genometranslation initiation factor, aiF-2Bi family4e-46185
NC_014122:665684:669104669104670099996Methanocaldococcus infernus ME chromosome, complete genomeeIF-2B alpha/beta/delta-related uncharacterized protein8e-46184
NC_009792:3665369:3696565369656536975931029Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein1e-44180
NC_014507:906960:9414459414459424851041Methanoplanus petrolearius DSM 11571 chromosome, complete genomeaIF-2BI family translation initiation factor3e-44179
NC_011420:2803196:2805690280569028068171128Rhodospirillum centenum SW, complete genometranslation initiation factor 2B subunit, putative9e-43174
NC_007681:1157402:117073211707321171676945Methanosphaera stadtmanae DSM 3091, complete genomeputative translation initiation factor aIF-2B, subunit 12e-42173
NC_011832:2668337:2669612266961226706641053Candidatus Methanosphaerula palustris E1-9c, complete genometranslation initiation factor, aIF-2BI family8e-42171
NC_008698:197294:2165822165822176191038Thermofilum pendens Hrk 5, complete genomeeIF-2B alpha/beta/delta-related uncharacterized proteins2e-41170
NC_017030:8766757:8793067879306787941821116Corallococcus coralloides DSM 2259 chromosome, complete genomemethylthioribose-1-phosphate isomerase8e-41167
NC_017059:1727095:1739392173939217404771086Rhodospirillum photometricum DSM 122, complete genomeTranslation initiation factor 2B subunit I family (IF-2BI)8e-40164
NC_015312:681678:697723697723698691969Pseudonocardia dioxanivorans CB1190 chromosome, complete genometranslation initiation factor, aIF-2BI family1e-39163
NC_015510:3375205:3403623340362334047231101Haliscomenobacter hydrossis DSM 1100 chromosome, complete genometranslation initiation factor, aIF-2BI family5e-39161
NC_015594:1210736:1223923122392312249931071Sphingobium chlorophenolicum L-1 chromosome chromosome 2, completemethylthioribose-1-phosphate isomerase4e-38159
NC_008818:956231:964540964540965496957Hyperthermus butylicus DSM 5456, complete genomeMethylthioribose-1-phosphate isomerase2e-37156
NC_016070:637739:641028641028641870843Thermoproteus tenax Kra 1, complete genometranslation initiation factor eIF-2B subunit alpha-21e-30134
NC_015578:247266:2508052508052519351131Treponema primitia ZAS-2 chromosome, complete genomeS-methyl-5-thioribose-1-phosphate isomerase2e-29130
NC_015577:1170186:1188441118844111895591119Treponema azotonutricium ZAS-9 chromosome, complete genomeS-methyl-5-thioribose-1-phosphate isomerase4e-29129
NC_000868:196015:197536197536198510975Pyrococcus abyssi GE5, complete genometranslation initiation factor IF-2B subunit delta4e-25115
NC_015474:644552:646053646053647018966Pyrococcus sp. NA2 chromosome, complete genometranslation initiation factor IF-2B subunit delta8e-25114
NC_013407:721344:741775741775742689915Methanocaldococcus vulcanius M7, complete genometranslation initiation factor, aIF-2BII family1e-24114
NC_013741:1037176:106182310618231062767945Archaeoglobus profundus DSM 5631, complete genometranslation initiation factor, aIF-2BII family7e-24111
NC_013926:321122:333548333548334477930Aciduliprofundum boonei T469 chromosome, complete genometranslation initiation factor, aIF-2BII family2e-23110
NC_003413:128228:128228128228129193966Pyrococcus furiosus DSM 3638, complete genometranslation initiation factor IF-2B subunit delta6e-23108
NC_015636:1455700:147244914724491473366918Methanothermococcus okinawensis IH1 chromosome, complete genometranslation initiation factor, aIF-2BII family9e-23107
NC_014614:432000:4490284490284500801053Clostridium sticklandii, complete genomeputative translation initiation factor EIF-2B subunit 19e-22104
NC_000961:172610:183493183493184467975Pyrococcus horikoshii OT3, complete genometranslation initiation factor IF-2B subunit delta1e-21103
NC_014364:2562281:2570641257064125717081068Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeeIF-2B alpha/beta/delta-related uncharacterized protein3e-21103
NC_009142:3943829:3968005396800539690391035Saccharopolyspora erythraea NRRL 2338, complete genomemethylthioribose-1-phosphate isomerase6e-2098.6
NC_016070:637739:641867641867642136270Thermoproteus tenax Kra 1, complete genometranslation initiation factor aIF-2B, alpha-1 subunit9e-1168.2
NC_000961:372000:402767402767403597831Pyrococcus horikoshii OT3, complete genometranslation initiation factor IF-2B subunit delta4e-1065.9
NC_015948:2367000:238357323835732384424852Haloarcula hispanica ATCC 33960 chromosome chromosome I, completetranslation initiation factor aIF-2B subunit delta5e-0962.4
NC_015954:1051440:107559810755981076443846Halophilic archaeon DL31 chromosome, complete genomeinitiation factor 2B-like protein3e-0859.7