Pre_GI: BLASTP Hits

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Query: NC_003366:1901898:1918849 Clostridium perfringens str. 13, complete genome

Start: 1918849, End: 1919451, Length: 603

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is a type A isolate from the soil. It can establish gas gangrene in a murine experimental model. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008261:2117207:213416221341622134764603Clostridium perfringens ATCC 13124, complete genomehypothetical protein2e-102371
NC_008262:1795914:180821218082121808814603Clostridium perfringens SM101, complete genomehypothetical protein2e-101367
NC_009697:2680607:269604226960422696617576Clostridium botulinum A str. ATCC 19397 chromosome, completehypothetical protein1e-1686.7
NC_012563:2979147:299721829972182997793576Clostridium botulinum A2 str. Kyoto, complete genomehypothetical protein1e-1686.7
NC_010723:2735196:275013527501352750698564Clostridium botulinum E3 str. Alaska E43, complete genomehypothetical protein2e-1685.5
NC_010674:2930259:294582229458222946385564Clostridium botulinum B str. Eklund 17B, complete genomehypothetical protein9e-1683.2
NC_015425:906969:910650910650911177528Clostridium botulinum BKT015925 chromosome, complete genomehypothetical protein9e-1063.5
NC_008593:841291:844964844964845491528Clostridium novyi NT, complete genomehypothetical protein7e-0857