Pre_GI: BLASTP Hits

Some Help

Query: NC_003062:50756:69458 Agrobacterium tumefaciens str. C58 chromosome circular, complete

Start: 69458, End: 70087, Length: 630

Host Lineage: Agrobacterium fabrum; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain is a biovar 1 nopaline-producing strain originally isolated from a cherry tree tumor. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003304:51048:696596965970288630Agrobacterium tumefaciens str. C58 chromosome circular, completeputative fructose transport system kinase4e-99360
NC_015183:51500:700387003870667630Agrobacterium sp. H13-3 chromosome, complete genomePantothenate kinase3e-91334
NC_018644:602200:603661603661604293633Alpha proteobacterium HIMB59 chromosome, complete genomefructokinase8e-40163
NC_014010:1020488:102311810231181023750633Candidatus Puniceispirillum marinum IMCC1322 chromosome, completehypothetical protein6e-35147
NC_014532:1713987:173407317340731734705633Halomonas elongata DSM 2581, complete genomeputative fructose transport system kinase2e-31135
NC_016111:1:109811098111583603Streptomyces cattleya NRRL 8057, complete genomehypothetical protein2e-1582.4
NC_016632:1637500:165776016577601658728969Serratia symbiotica str. 'Cinara cedri' chromosome, completetype I pantothenate kinase1e-1066.6
NC_019907:1454554:147337614733761474341966Liberibacter crescens BT-1 chromosome, complete genomepantothenate kinase2e-0962.4
NC_014774:293800:302377302377303315939Candidatus Liberibacter solanacearum CLso-ZC1 chromosome, completepantothenate kinase2e-0859.3
NC_013174:650986:661280661280662254975Jonesia denitrificans DSM 20603, complete genomepantothenate kinase2e-0858.9
NC_016109:3525588:352558835255883526580993Kitasatospora setae KM-6054, complete genomeputative pantothenate kinase3e-0858.5
NC_003888:5114147:515116851511685152157990Streptomyces coelicolor A3(2), complete genomepantothenate kinase4e-0858.2
NC_013929:4136742:413674241367424137731990Streptomyces scabiei 87.22 chromosome, complete genomepantothenate kinase5e-0857.8
NC_007946:3683371:369006336900633691034972Escherichia coli UTI89, complete genomepantothenate kinase7e-0857.4
NC_000913:4159090:417209941720994173049951Escherichia coli K12, complete genomepantothenate kinase7e-0857.4
CU928160:4248621:426322142632214264171951Escherichia coli IAI1 chromosome, complete genomepantothenate kinase7e-0857.4
NC_011750:4543135:455392145539214554871951Escherichia coli IAI39 chromosome, complete genomepantothenate kinase7e-0857.4
NC_010468:4455201:445732744573274458253927Escherichia coli ATCC 8739, complete genomepantothenate kinase7e-0857.4
NC_010473:4256000:427179642717964272746951Escherichia coli str. K-12 substr. DH10B, complete genomepantothenate kinase7e-0857.4
NC_006511:4119332:413232341323234133273951Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCpantothenate kinase8e-0857
NC_003198:3586000:359156535915653592515951Salmonella enterica subsp. enterica serovar Typhi str. CT18,pantothenate kinase8e-0857
NC_003155:5987000:600944460094446010433990Streptomyces avermitilis MA-4680, complete genomepantothenate kinase8e-0857
NC_009436:203365:218995218995219966972Enterobacter sp. 638, complete genomepantothenate kinase1e-0756.2
NC_015145:2942500:294463129446312945596966Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genomepantothenate kinase2e-0756.2
NC_015968:204969:225041225041225991951Enterobacter asburiae LF7a chromosome, complete genomePantothenate kinase2e-0756.2
NC_011184:2723000:272330127233012724224924Vibrio fischeri MJ11 chromosome I, complete sequencepantothenate kinase2e-0755.8
NC_011886:2950411:295462729546272955622996Arthrobacter chlorophenolicus A6, complete genomepantothenate kinase3e-0755.5
NC_012590:1004816:102168510216851022611927Corynebacterium aurimucosum ATCC 700975, complete genomepantothenate kinase2e-0755.5
NC_008541:3282415:328448932844893285406918Arthrobacter sp. FB24 chromosome 1, complete sequencepantothenate kinase3e-0755.1
NC_015953:4385419:442896744289674429959993Streptomyces sp. SirexAA-E chromosome, complete genomepantothenate kinase4e-0755.1
NC_012985:410307:420756420756421691936Candidatus Liberibacter asiaticus str. psy62, complete genomepantothenate kinase4e-0754.7
NC_013205:2332174:233654623365462337505960Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,pantothenate kinase5e-0754.3
NC_018750:4728870:475853847585384759506969Streptomyces venezuelae ATCC 10712, complete genomePantothenate kinase6e-0753.9
NC_013199:1966334:197955019795501980476927Lactobacillus rhamnosus Lc 705, complete genomepantothenate kinase, Rts protein1e-0653.5
NC_014334:1848340:186582618658261866752927Lactobacillus casei str. Zhang chromosome, complete genomePanthothenate kinase1e-0653.1
NC_010999:2059738:208046620804662081392927Lactobacillus casei, complete genomePantothenate kinase (Pantothenic acid kinase)1e-0653.1