Pre_GI: OUP Neighbours

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Query: NC_008526:817628 Lactobacillus casei ATCC 334, complete genome

D: 36.4528

Host Lineage: Lactobacillus casei; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: This strain was isolated from Emmental cheese. Starter culture for milk fermentation and flavor development of cheese. They are commonly found in the oral, vaginal, and intestinal regions of many animals. They are important industrial microbes that contribute to the production of cheese, yogurt, fermented milks, and other products, all stemming from the production of lactic acid, which inhibits the growth of other organisms as well as lowering the pH of the food product. Industrial production requires the use of starter cultures, which are carefully created, cultivated, and maintained, which produce specific end products during fermentation that impart flavor to the final product, as well as contributing important metabolic reactions, such as the breakdown of milk proteins during cheese production. The end product of fermentation, lactic acid, is also being used as a starter molecule for complex organic molecule syntheses. Lactobacillus casei is used as a starter culture during milk fermentation and for the flavor development of certain bacterial-ripened cheeses.

Number of Neighbours: 15




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_010999:880878*Lactobacillus casei, complete genome92.5797 %Subject ←→ Query40.5776
NC_013199:811929*Lactobacillus rhamnosus Lc 705, complete genome83.4773 %Subject ←→ Query39.2072
NC_013198:813830*Lactobacillus rhamnosus GG, complete genome83.3241 %Subject ←→ Query37.9547
NC_013199:1886271*Lactobacillus rhamnosus Lc 705, complete genome81.2316 %Subject ←→ Query35.0179
NC_013198:1921500*Lactobacillus rhamnosus GG, complete genome80.2972 %Subject ←→ Query33.277
NC_013198:298000*Lactobacillus rhamnosus GG, complete genome79.5558 %Subject ←→ Query33.8795
NC_013199:282901*Lactobacillus rhamnosus Lc 705, complete genome78.8879 %Subject ←→ Query34.5452
NC_013199:2536705*Lactobacillus rhamnosus Lc 705, complete genome78.1985 %Subject ←→ Query37.5527
NC_008526:74500*Lactobacillus casei ATCC 334, complete genome78.0178 %Subject ←→ Query28.9383
NC_015428:700479*Lactobacillus buchneri NRRL B-30929 chromosome, complete genome77.2518 %Subject ←→ Query38.8838
NC_014334:589526Lactobacillus casei str. Zhang chromosome, complete genome76.3787 %Subject ←→ Query32.7578
NC_007520:2128178*Thiomicrospira crunogena XCL-2, complete genome75.9926 %Subject ←→ Query31.6498
NC_015428:2291430*Lactobacillus buchneri NRRL B-30929 chromosome, complete genome75.7322 %Subject ←→ Query30.5599
NC_010554:2646806Proteus mirabilis HI4320, complete genome75.4718 %Subject ←→ Query35.3988
NC_008526:2489196*Lactobacillus casei ATCC 334, complete genome75.242 %Subject ←→ Query36.8865