Pre_GI: OUP Neighbours

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Query: NC_013199:282901 Lactobacillus rhamnosus Lc 705, complete genome

D: 34.5452

Host Lineage: Lactobacillus rhamnosus; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: They are commonly found in the oral, vaginal, and intestinal regions of many animals. They are important industrial microbes that contribute to the production of cheese, yogurt, and other products such as fermented milks, all stemming from the production of lactic acid, which inhibits the growth of other organisms as well as lowering the pH of the food product. Industrial production requires the use of starter cultures, which are carefully cultivated, created, and maintained, which produce specific end products during fermentation that impart flavor to the final product, as well as contributing important metabolic reactions, such as the breakdown of milk proteins during cheese production. The end product of fermentation, lactic acid, is also being used as a starter molecule for complex organic molecule syntheses. Lactobacillus rhamnosus is used in the manufacture of cheese and other dairy products to aid ripening and enhance flavors. This organism has also been shown to stimulate the immune system and have antibacterial activity against intestinal pathogens, indicating that it may be useful as a probiotic.

Number of Neighbours: 20




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_008497:556365*Lactobacillus brevis ATCC 367, complete genome75.0276 %Subject ←→ Query27.4289
NC_008526:74500*Lactobacillus casei ATCC 334, complete genome77.6716 %Subject ←→ Query28.9383
NC_013895:35410*Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, complete75.7966 %Subject ←→ Query29.189
NC_015572:293665*Methylomonas methanica MC09 chromosome, complete genome75.3033 %Subject ←→ Query29.572
NC_015428:2291430*Lactobacillus buchneri NRRL B-30929 chromosome, complete genome75.4412 %Subject ←→ Query30.5599
NC_007520:2128178*Thiomicrospira crunogena XCL-2, complete genome75.0705 %Subject ←→ Query31.6498
NC_012880:3915500*Dickeya dadantii Ech703, complete genome75.7935 %Subject ←→ Query32.55
NC_013198:1921500*Lactobacillus rhamnosus GG, complete genome81.7647 %Subject ←→ Query33.277
NC_013198:298000*Lactobacillus rhamnosus GG, complete genome91.9547 %Subject ←→ Query33.8795
NC_015572:1Methylomonas methanica MC09 chromosome, complete genome76.0478 %Subject ←→ Query34.0009
NC_015572:1421782Methylomonas methanica MC09 chromosome, complete genome76.3634 %Subject ←→ Query34.0502
NC_013199:1886271*Lactobacillus rhamnosus Lc 705, complete genome82.2028 %Subject ←→ Query35.0179
NC_008526:817628*Lactobacillus casei ATCC 334, complete genome78.8879 %Subject ←→ Query36.4528
NC_008526:2489196*Lactobacillus casei ATCC 334, complete genome77.4877 %Subject ←→ Query36.8865
NC_013199:2536705*Lactobacillus rhamnosus Lc 705, complete genome80.8548 %Subject ←→ Query37.5527
NC_015572:4916430Methylomonas methanica MC09 chromosome, complete genome77.0098 %Subject ←→ Query37.6362
NC_013198:813830*Lactobacillus rhamnosus GG, complete genome82.1324 %Subject ←→ Query37.9547
NC_013199:811929*Lactobacillus rhamnosus Lc 705, complete genome82.4387 %Subject ←→ Query39.2072
NC_015572:4209000*Methylomonas methanica MC09 chromosome, complete genome76.8107 %Subject ←→ Query40.0218
NC_010999:880878*Lactobacillus casei, complete genome78.5018 %Subject ←→ Query40.5776