Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_011748: Escherichia coli 55989, complete genome

NCBI: NC_011748

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Isolated from the diarrheagenic stools of an HIV-positive adult suffering from persistent watery diarrhea in Central African Republic. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
111394*3596224569Island text2.5221335.060232.1057Neighbours41BLASTN11394.gbk
2143755*16736523611Island text1.7189233.529925.405Neighbours41BLASTN+IslandViewer 143755.gbk
329908032372424645Island text1.9719534.229628.2678Neighbours41BLASTN+IslandViewer 299080.gbk
482436784378119415Island text1.7924730.058422.0916Neighbours41BLASTN+IslandViewer 824367.gbk
51300863*132330622444Island text2.5645333.751516.5177Neighbours41BLASTN+IslandViewer 1300863.gbk
61408280*143235524076Island text2.2735634.581720.7917Neighbours41BLASTN+IslandViewer 1408280.gbk
71684777170387419098Island text2.1275730.464220.3496Neighbours41BLASTN+IslandViewer 1684777.gbk
81773642*179521821577Island text1.4138132.660543.3366Neighbours41BLASTN+IslandViewer 1773642.gbk
92237099*226332326225Island text1.5829735.290625.7762Neighbours11BLASTN+2237099.gbk
102324495235493330439Island text5.8448544.549321.6974Neighbours41BLASTNIslandViewer 2324495.gbk
112655989*268823232244Island text2.4014234.510519.0376Neighbours41BLASTN+IslandViewer 2655989.gbk
122708500272609917600Island text1.9951430.967321.5495Neighbours41BLASTN+IslandViewer 2708500.gbk
132973968*299959925632Island text2.0740235.018118.9419Neighbours41BLASTN+IslandViewer 2973968.gbk
143196173*323284736675Island text5.3096943.120417.8692Neighbours41BLASTN+IslandViewer 3196173.gbk
153360967*340151440548Island text2.64542.765923.9764Neighbours41BLASTN+IslandViewer 3360967.gbk
163529930355057820649Island text2.4481933.15422.0551Neighbours41BLASTN+IslandViewer 3529930.gbk
173608917*363276823852Island text1.9019230.274228.9195Neighbours41BLASTN+3608917.gbk
183958572397962121050Island text2.143733.323220.2643Neighbours41BLASTN+IslandViewer 3958572.gbk
193983432403268849257Island text2.1802336.437619.9553Neighbours41BLASTN+IslandViewer 3983432.gbk
204131924415503823115Island text1.7088833.334126.4027Neighbours41BLASTN4131924.gbk
214167043*419159624554Island text2.689335.490419.3461Neighbours41BLASTNIslandViewer 4167043.gbk
224695932471752121590Island text1.5445234.104523.5656Neighbours41BLASTN+4695932.gbk
234792703*481092818226Island text1.4893531.693830.5153Neighbours41BLASTN+IslandViewer 4792703.gbk
244950723*498014229420Island text2.0478731.675615.674Neighbours41BLASTN+IslandViewer 4950723.gbk