Pre_GI: BLASTN Hits

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Query: NC_011748:1408280 Escherichia coli 55989, complete genome

Start: 1408280, End: 1432355, Length: 24076

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Isolated from the diarrheagenic stools of an HIV-positive adult suffering from persistent watery diarrhea in Central African Republic. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
CU928145:1408280*1408280143235524076Escherichia coli 55989 chromosome, complete genome047000BLASTN svgBLASTP svg
NC_009801:13926961392696142187429179Escherichia coli E24377A, complete genome06932BLASTN svgBLASTP svg
NC_009801:14193241419324143859919276Escherichia coli E24377A, complete genome06845BLASTN svgBLASTP svg
NC_011751:18596061859606188482925224Escherichia coli UMN026 chromosome, complete genome05382BLASTN svgBLASTP svg
NC_011748:1773642*1773642179521821577Escherichia coli 55989, complete genome04571BLASTN svgBLASTP svg
CU928145:1773642*1773642179521821577Escherichia coli 55989 chromosome, complete genome04571BLASTN svgBLASTP svg
CP002185:17708151770815179359922785Escherichia coli W, complete genome03394BLASTN svgBLASTP svg
CP002516:2305659*2305659232825322595Escherichia coli KO11, complete genome03394BLASTN svgBLASTP svg
CU928160:16688421668842169164522804Escherichia coli IAI1 chromosome, complete genome03394BLASTN svgBLASTP svg
NC_010468:2265423*2265423228519619774Escherichia coli ATCC 8739, complete genome03394BLASTN svgBLASTP svg
NC_009801:17566101756610177871522106Escherichia coli E24377A, complete genome03096BLASTN svgBLASTP svg
NC_010473:1712984*1712984174109928116Escherichia coli str. K-12 substr. DH10B, complete genome02958BLASTN svgBLASTP svg
NC_000913:1625500*1625500165193926440Escherichia coli K12, complete genome02958BLASTN svgBLASTP svg
AC_000091:16270491627049165562928581Escherichia coli W3110 DNA, complete genome02958BLASTN svgBLASTP svg
NC_002695:3468873*3468873351343744565Escherichia coli O157:H7 str. Sakai, complete genome01403BLASTN svgBLASTP svg
NC_002695:1929215*1929215195011620902Escherichia coli O157:H7 str. Sakai, complete genome01380BLASTN svgBLASTP svg
NC_009648:5119271*5119271515776838498Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome01283BLASTN svgBLASTP svg
NC_010658:1933605*1933605196015326549Shigella boydii CDC 3083-94, complete genome01178BLASTN svgBLASTP svg
CP002516:2580774*2580774260629825525Escherichia coli KO11, complete genome0981BLASTN svgBLASTP svg
NC_002655:2142587*2142587216371121125Escherichia coli O157:H7 EDL933, complete genome0890BLASTN svgBLASTP svg
NC_002655:3538656*3538656358072742072Escherichia coli O157:H7 EDL933, complete genome0876BLASTN svgBLASTP svg
NC_008258:2045000*2045000206275017751Shigella flexneri 5 str. 8401, complete genome0833BLASTN svgBLASTP svg
NC_008258:1934479*1934479196306928591Shigella flexneri 5 str. 8401, complete genome0827BLASTN svgBLASTP svg
NC_008563:14755001475500149389218393Escherichia coli APEC O1, complete genome0706BLASTN svgBLASTP svg
NC_011750:15650001565000158659921600Escherichia coli IAI39 chromosome, complete genome0666BLASTN svgBLASTP svg
NC_003198:19082381908238193517826941Salmonella enterica subsp. enterica serovar Typhi str. CT18,6e-171609BLASTN svgBLASTP svg
NC_008563:50119975011997503931827322Escherichia coli APEC O1, complete genome1e-165591BLASTN svgBLASTP svg
NC_004431:30409533040953306393422982Escherichia coli CFT073, complete genome1e-165591BLASTN svgBLASTP svg
CP002185:1493280*1493280151559922320Escherichia coli W, complete genome3e-163583BLASTN svgBLASTP svg
NC_011740:45203734520373454479624424Escherichia fergusonii ATCC 35469, complete genome3e-163583BLASTN svgBLASTP svg
NC_009800:16575501657550168574228193Escherichia coli HS, complete genome8e-161575BLASTN svgBLASTP svg
NC_010067:25297502529750259435464605Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete4e-150539BLASTN svgBLASTP svg
NC_006905:368942*36894239327424333Salmonella enterica subsp. enterica serovar Choleraesuis str2e-136494BLASTN svgBLASTP svg
NC_009800:289000*28900031038921390Escherichia coli HS, complete genome6e-134486BLASTN svgBLASTP svg
NC_011083:374000*37400039609922100Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,5e-128466BLASTN svgBLASTP svg
CU928145:82436782436784378119415Escherichia coli 55989 chromosome, complete genome8e-127462BLASTN svgBLASTP svg
NC_011748:82436782436784378119415Escherichia coli 55989, complete genome8e-127462BLASTN svgBLASTP svg
NC_007613:10380001038000106059922600Shigella boydii Sb227, complete genome4e-110406BLASTN svgBLASTP svg
NC_007384:1320287*1320287134781127525Shigella sonnei Ss046, complete genome4e-110406BLASTN svgBLASTP svg
NC_007384:2933625*2933625295770924085Shigella sonnei Ss046, complete genome3e-83317BLASTN svgBLASTP svg
NC_013716:5141269*5141269517008828820Citrobacter rodentium ICC168, complete genome1e-70276BLASTN svgBLASTP svg
NC_007946:1239278*1239278125938320106Escherichia coli UTI89, complete genome2e-66262BLASTN svgBLASTP svg
NC_008563:1175035*1175035119859923565Escherichia coli APEC O1, complete genome2e-66262BLASTN svgBLASTP svg
NC_010473:1493983*1493983151640422422Escherichia coli str. K-12 substr. DH10B, complete genome5e-57230BLASTN svgBLASTP svg
NC_000913:1404000*1404000142700823009Escherichia coli K12, complete genome5e-57230BLASTN svgBLASTP svg
AC_000091:1407693*1407693143069823006Escherichia coli W3110 DNA, complete genome5e-57230BLASTN svgBLASTP svg
AC_000091:55892055892058720428285Escherichia coli W3110 DNA, complete genome2e-53218BLASTN svgBLASTP svg
NC_000913:558920*55892058509926180Escherichia coli K12, complete genome2e-53218BLASTN svgBLASTP svg
NC_010473:498252*49825252418825937Escherichia coli str. K-12 substr. DH10B, complete genome2e-53218BLASTN svgBLASTP svg
NC_010473:62381062381065051726708Escherichia coli str. K-12 substr. DH10B, complete genome2e-53218BLASTN svgBLASTP svg
NC_011740:27699612769961278959919639Escherichia fergusonii ATCC 35469, complete genome1e-36163BLASTN svgBLASTP svg
NC_011750:5045927*5045927506827722351Escherichia coli IAI39 chromosome, complete genome2e-31145BLASTN svgBLASTP svg
AP010958:12660*126603398921330Escherichia coli O103:H2 str. 12009 DNA, complete genome2e-28135BLASTN svgBLASTP svg
CP002185:11921*119213722925309Escherichia coli W, complete genome2e-28135BLASTN svgBLASTP svg
CP002516:4081484*4081484410409522612Escherichia coli KO11, complete genome2e-28135BLASTN svgBLASTP svg
CU928160:11381*113813595024570Escherichia coli IAI1 chromosome, complete genome2e-28135BLASTN svgBLASTP svg
NC_009800:12162*121623729725136Escherichia coli HS, complete genome2e-28135BLASTN svgBLASTP svg
NC_009801:11921*119213399422074Escherichia coli E24377A, complete genome2e-28135BLASTN svgBLASTP svg
NC_011750:12047*120474221230166Escherichia coli IAI39 chromosome, complete genome2e-28135BLASTN svgBLASTP svg
NC_011751:12000*120003835526356Escherichia coli UMN026 chromosome, complete genome2e-28135BLASTN svgBLASTP svg
NC_011751:643976*64397666569121716Escherichia coli UMN026 chromosome, complete genome1e-26129BLASTN svgBLASTP svg
NC_011748:11394*113943596224569Escherichia coli 55989, complete genome6e-26127BLASTN svgBLASTP svg
NC_010468:3970995*3970995399406323069Escherichia coli ATCC 8739, complete genome6e-26127BLASTN svgBLASTP svg
NC_002695:12000*120003517323174Escherichia coli O157:H7 str. Sakai, complete genome6e-26127BLASTN svgBLASTP svg
CU928145:11394*113943596224569Escherichia coli 55989 chromosome, complete genome6e-26127BLASTN svgBLASTP svg
NC_002655:12000*120003357021571Escherichia coli O157:H7 EDL933, complete genome9e-25123BLASTN svgBLASTP svg
NC_020063:2449554*2449554247289823345Enterobacteriaceae bacterium strain FGI 57, complete genome1e-23119BLASTN svgBLASTP svg
NC_009792:17701061770106179490624801Citrobacter koseri ATCC BAA-895, complete genome1e-23119BLASTN svgBLASTP svg
NC_011740:20721732072173211413741965Escherichia fergusonii ATCC 35469, complete genome2e-22115BLASTN svgBLASTP svg
CU928145:2973968*2973968299959925632Escherichia coli 55989 chromosome, complete genome8e-19103BLASTN svgBLASTP svg
CU928160:2818750*2818750284490226153Escherichia coli IAI1 chromosome, complete genome8e-19103BLASTN svgBLASTP svg
NC_000913:2746886*2746886280151454629Escherichia coli K12, complete genome8e-19103BLASTN svgBLASTP svg
NC_004337:2747917*2747917277096123045Shigella flexneri 2a str. 301, complete genome8e-19103BLASTN svgBLASTP svg
NC_004741:2741971*2741971276422322253Shigella flexneri 2a str. 2457T, complete genome8e-19103BLASTN svgBLASTP svg
NC_008258:2905413*2905413292427518863Shigella flexneri 5 str. 8401, complete genome8e-19103BLASTN svgBLASTP svg
NC_009800:2788164*2788164280740719244Escherichia coli HS, complete genome8e-19103BLASTN svgBLASTP svg
NC_009801:2898426*2898426294876250337Escherichia coli E24377A, complete genome8e-19103BLASTN svgBLASTP svg
NC_010468:1130000*1130000115350023501Escherichia coli ATCC 8739, complete genome8e-19103BLASTN svgBLASTP svg
NC_010473:2839902*2839902288978149880Escherichia coli str. K-12 substr. DH10B, complete genome8e-19103BLASTN svgBLASTP svg
NC_010498:2847359*2847359287165924301Escherichia coli SMS-3-5, complete genome8e-19103BLASTN svgBLASTP svg
NC_011748:2973968*2973968299959925632Escherichia coli 55989, complete genome8e-19103BLASTN svgBLASTP svg
AC_000091:2747520*2747520280214854629Escherichia coli W3110 DNA, complete genome8e-19103BLASTN svgBLASTP svg
NC_020181:2097066*2097066212464227577Enterobacter aerogenes EA1509E, complete genome3e-18101BLASTN svgBLASTP svg
NC_011751:3048490*3048490309200343514Escherichia coli UMN026 chromosome, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_011750:2928990*2928990296940040411Escherichia coli IAI39 chromosome, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_004851:19170919170922249930791Shigella flexneri 2a str. 301 plasmid pCP301, complete sequence2e-1695.6BLASTN svgBLASTP svg
NC_013716:1138441*1138441116841529975Citrobacter rodentium ICC168, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_008563:2946391*2946391296667220282Escherichia coli APEC O1, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_007946:29313642931364295051219149Escherichia coli UTI89, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_020063:23438132343813236609922287Enterobacteriaceae bacterium strain FGI 57, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_014837:3739408*3739408376471125304Pantoea sp. At-9b chromosome, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_014121:16826381682638172492542288Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete2e-1385.7BLASTN svgBLASTP svg
NC_007606:4182188*4182188420162219435Shigella dysenteriae Sd197, complete genome2e-1385.7BLASTN svgBLASTP svg
AC_000091:24624612462461248878526325Escherichia coli W3110 DNA, complete genome8e-1383.8BLASTN svgBLASTP svg
NC_000913:2455037*2455037248136126325Escherichia coli K12, complete genome8e-1383.8BLASTN svgBLASTP svg
NC_008258:18738051873805189655222748Shigella flexneri 5 str. 8401, complete genome8e-1383.8BLASTN svgBLASTP svg
NC_010473:2548946*2548946258173732792Escherichia coli str. K-12 substr. DH10B, complete genome8e-1383.8BLASTN svgBLASTP svg
NC_006511:25015002501500252217820679Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC5e-1177.8BLASTN svgBLASTP svg
NC_015663:770485*77048579596825484Enterobacter aerogenes KCTC 2190 chromosome, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_015061:59624759624762407627830Rahnella sp. Y9602 chromosome, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_007516:53250053250055441121912Synechococcus sp. CC9605, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_007712:1182518*1182518121806435547Sodalis glossinidius str. 'morsitans', complete genome2e-0765.9BLASTN svgBLASTP svg
NC_014562:983398*983398101509931702Pantoea vagans C9-1 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_014833:3444550*3444550347132026771Ruminococcus albus 7 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_020181:52170005217000524709930100Enterobacter aerogenes EA1509E, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_000913:1188999*1188999122144532447Escherichia coli K12, complete genome7e-0763.9BLASTN svgBLASTP svg
AC_000091:1191353*1191353122209930747Escherichia coli W3110 DNA, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_014562:2871765*2871765290090029136Pantoea vagans C9-1 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
AP010958:3853082*3853082389809945018Escherichia coli O103:H2 str. 12009 DNA, complete genome3e-0661.9BLASTN svgBLASTP svg