Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




AP010958: Escherichia coli O103:H2 str. 12009 DNA, complete genome

NCBI: AP010958

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
112660*3398921330Island text2.4466436.456628.3591Neighbours41BLASTN12660.gbk
2143358*16609922742Island text1.7406931.736426.142Neighbours41BLASTN+143358.gbk
360471962691322195Island text1.8864833.566425.1035Neighbours41BLASTN+604719.gbk
486786989060722739Island text1.8067837.129737.9559Neighbours41BLASTN867869.gbk
592293795098628050Island text5.3799443.345621.0817Neighbours41BLASTN+922937.gbk
61305712133215626445Island text3.2148742.737427.1081Neighbours41BLASTN+1305712.gbk
71339263*136273323471Island text2.4522435.203516.9558Neighbours41BLASTN1339263.gbk
81472506149531022805Island text1.5192336.712736.0692Neighbours51BLASTN+1472506.gbk
91711656173552123866Island text2.0724832.544821.2899Neighbours41BLASTN+1711656.gbk
102134556*215269018135Island text1.7330632.821632.7324Neighbours41BLASTN2134556.gbk
112272919229869725779Island text2.1752538.200330.1531Neighbours41BLASTN2272919.gbk
122455052*247359918548Island text1.6478731.420226.5745Neighbours41BLASTN2455052.gbk
132504072253559331522Island text4.7619544.300622.6105Neighbours41BLASTN2504072.gbk
142911741*294759935859Island text1.9605732.017633.9105Neighbours41BLASTN+2911741.gbk
153238742326213723396Island text2.8181240.270521.0557Neighbours41BLASTN+3238742.gbk
163474077*351339539319Island text5.0677343.38918.097Neighbours41BLASTN+3474077.gbk
173627355365976432410Island text3.11243.157523.3016Neighbours41BLASTN+3627355.gbk
183669500372827458775Island text3.1819242.604523.1319Neighbours41BLASTN+3669500.gbk
193787991381070122711Island text2.3135133.897719.9903Neighbours41BLASTN+3787991.gbk
203853082*389809945018Island text2.0932737.958229.1898Neighbours41BLASTN+3853082.gbk
214313462433479021329Island text2.180734.312222.1793Neighbours41BLASTN+4313462.gbk
224668181*469259924419Island text2.7128837.297721.3346Neighbours41BLASTN4668181.gbk
234707712*472598018269Island text2.0025232.970623.2184Neighbours41BLASTN4707712.gbk
245022196504082118626Island text1.4683733.037521.4155Neighbours41BLASTN+5022196.gbk
255090696*512565934964Island text3.0061342.849323.0641Neighbours41BLASTN+5090696.gbk
265272863529459921737Island text1.4994334.849227.6952Neighbours41BLASTN5272863.gbk
275361207*538029819092Island text1.8523630.842724.5401Neighbours41BLASTN+5361207.gbk