Pre_GI: BLASTP Hits

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Query: NC_017378:1175639:1190135 Helicobacter pylori Puno120 chromosome, complete genome

Start: 1190135, End: 1191940, Length: 1806

Host Lineage: Helicobacter pylori; Helicobacter; Helicobacteraceae; Campylobacterales; Proteobacteria; Bacteria

General Information: This genus consists of organisms that colonize the mucosal layer of the gastrointestinal tract or are found enterohepatically (in the liver). It was only recently discovered (1983) by two Australians (Warren and Marshall) that this organism was associated with peptic ulcers. It is one of the most common chronic infectious organisms, and is found in half the world's population. This organism attacks the gastric epithilial surface, resulting in chronic gastritis, and can cause more severe diseases including those that lead to gastric carcinomas and lymphomas, peptic ulcers, and severe diarrhea. It is an extracellular pathogen that persists in the gastric environment, which has a very low pH, by production of the urease enzyme, which converts urea to ammonia and carbon dioxide, a process which can counteract the acidic environment by production of a base. The toxins include cytolethal distending toxin, vacuolating cytotoxin (VacA) that induces host epithelial cell apopoptosis (cell death), and the cytotoxin associated antigen (CagA) which results in alteration to the host cell signalling pathways. The CagA protein is translocated into host cells by a type IV secretion system encoded by the cag pathogenicity island.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017379:1233482:1244339124433912461441806Helicobacter pylori Puno135 chromosome, complete genomehypothetical protein01219
NC_017378:1175639:1188297118829711900691773Helicobacter pylori Puno120 chromosome, complete genomehypothetical protein0747
NC_017378:1175639:1186489118648911882311743Helicobacter pylori Puno120 chromosome, complete genomehypothetical protein0743
NC_017379:1233482:1246212124621212479721761Helicobacter pylori Puno135 chromosome, complete genomehypothetical protein0734
NC_000921:1007519:1012090101209010133251236Helicobacter pylori J99, complete genomehypothetical protein2e-88327
NC_017357:973392:975063975063975620558Helicobacter pylori 908 chromosome, complete genomehypothetical protein1e-55218
NC_017374:974279:975950975950976507558Helicobacter pylori 2017 chromosome, complete genomehypothetical protein1e-55218
NC_017381:982216:983905983905984462558Helicobacter pylori 2018 chromosome, complete genomehypothetical protein1e-55218
NC_017381:982216:984603984603984938336Helicobacter pylori 2018 chromosome, complete genomehypothetical protein5e-1169.7
NC_017374:974279:976648976648976983336Helicobacter pylori 2017 chromosome, complete genomehypothetical protein5e-1169.7
NC_017357:973392:975761975761976096336Helicobacter pylori 908 chromosome, complete genomehypothetical protein5e-1169.7
NC_014256:485969:532657532657533220564Helicobacter pylori B8 chromosome, complete genomehypothetical protein2e-0964.3
NC_017381:982216:983642983642983881240Helicobacter pylori 2018 chromosome, complete genomehypothetical protein3e-0757.4
NC_017374:974279:975687975687975926240Helicobacter pylori 2017 chromosome, complete genomehypothetical protein3e-0757.4
NC_017357:973392:974800974800975039240Helicobacter pylori 908 chromosome, complete genomehypothetical protein3e-0757.4