Pre_GI: BLASTP Hits

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Query: NC_017328:385552:403491 Shigella flexneri 2002017 chromosome, complete genome

Start: 403491, End: 403625, Length: 135

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004741:366822:385428385428385562135Shigella flexneri 2a str. 2457T, complete genomeISSfl3 orfC2e-1891.3
NC_008258:401786:423278423278423412135Shigella flexneri 5 str. 8401, complete genomeISSfl4 ORF32e-1891.3
NC_017319:155958:168733168733169290558Shigella flexneri 2002017 plasmid pSFxv_1, complete sequenceISSfl4 ORF33e-1477.4
NC_004851:157675:1677601677601693611602Shigella flexneri 2a str. 301 plasmid pCP301, complete sequenceISSfl4 ORF33e-1477
NC_010660:33109:4851348513501141602Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequencetransposase family3e-1477
NC_017319:155958:1744061744061760071602Shigella flexneri 2002017 plasmid pSFxv_1, complete sequenceISSfl4 ORF33e-1477
NC_004851:157675:1744761744761760771602Shigella flexneri 2a str. 301 plasmid pCP301, complete sequenceISSfl4 ORF33e-1477
NC_008258:2045000:205929820592982059573276Shigella flexneri 5 str. 8401, complete genomeISSfl4 ORF33e-1477