Pre_GI: BLASTP Hits

Some Help

Query: NC_016830:3697173:3715768 Pseudomonas fluorescens F113 chromosome, complete genome

Start: 3715768, End: 3716166, Length: 399

Host Lineage: Pseudomonas fluorescens; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This organism is a nonpathogenic saprophyte which inhabits soil, water and plant surface environments. If iron is in low supply, it produces a soluble, greenish fluorescent pigment, which is how it was named. As these environmentally versatile bacteria possess the ability to degrade (at least partially) multiple different pollutants, they are studied in their use as bioremediants. Furthermore a number of strains also posses the ability to suppress agricultural pathogens like fungal infections, hence their role as biocontrol (biological disease control) agents is under examination. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007974:934000:953531953531954031501Ralstonia metallidurans CH34 chromosome 2, complete sequencesigma-24 (FecI-like)7e-27119
NC_008027:2648560:265202626520262652541516Pseudomonas entomophila L48, complete genomeRNA polymerase sigma-70 factor, ECF subfamily1e-24111
NC_018691:1293449:131432713143271314809483Alcanivorax dieselolei B5 chromosome, complete genomeRNA polymerase sigma factor FecI7e-23105
NC_015556:2265940:230300923030092303524516Pseudomonas fulva 12-X chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily1e-22104
AC_000091:4501430:452239445223944522915522Escherichia coli W3110 DNA, complete genomeRNA polymerase, sigma 19 factor4e-21100
NC_010473:4596500:461754546175454618066522Escherichia coli str. K-12 substr. DH10B, complete genomeKpLE2 phage-like element; RNA polymerase, sigma 19 factor4e-21100
NC_012759:4433500:445447244544724454993522Escherichia coli BW2952 chromosome, complete genomeRNA polymerase sigma factor FecI4e-21100
NC_016822:4889656:489396448939644894485522Shigella sonnei 53G, complete genomeRNA polymerase sigma factor FecI4e-21100
NC_015572:427732:454649454649455155507Methylomonas methanica MC09 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit6e-2199.4
NC_010322:768849:792731792731793237507Pseudomonas putida GB-1 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 factor3e-2097.1
NC_008027:4889662:489179248917924892286495Pseudomonas entomophila L48, complete genomeRNA polymerase sigma-70 factor, ECF subfamily8e-2095.5
NC_021150:201237:217624217624218127504Azotobacter vinelandii CA6, complete genomeRNA polymerase sigma factor, FecI family3e-1890.1
NC_012560:201237:217624217624218127504Azotobacter vinelandii DJ, complete genomeRNA polymerase sigma factor, FecI family3e-1890.1
NC_014640:2693060:269306026930602693566507Achromobacter xylosoxidans A8 chromosome, complete genomeRNA polymerase sigma factor FecI3e-1787.4
NC_018691:318662:319603319603320118516Alcanivorax dieselolei B5 chromosome, complete genomeRNA polymerase sigma-70 factor, ECF subfamily3e-1787
NC_014640:2693060:269731826973182697830513Achromobacter xylosoxidans A8 chromosome, complete genomeRNA polymerase sigma factor FecI4e-1786.7
NC_016612:3843358:387250338725033873024522Klebsiella oxytoca KCTC 1686 chromosome, complete genomeRNA polymerase sigma factor FecI6e-1785.9
NC_012962:4591295:459787345978734598394522Photorhabdus asymbiotica, complete genomeprobable rna polymerase sigma factor feci2e-1684.3
NC_004757:2657490:265749026574902658047558Nitrosomonas europaea ATCC 19718, complete genomeProbable fecI Specialized sigma subunits of RNA polymerase6e-1682.8
NC_005966:1780468:178413917841391784624486Acinetobacter sp. ADP1, complete genomealternative RNAP sigma factor required for fecA promoter recognition and ferric citrate transport; activated by FecR1e-1582
NC_014228:3591758:359930735993073599843537Xenorhabdus nematophila ATCC 19061, complete genomeProbable RNA polymerase sigma factor fecI1e-1581.6
NC_004547:1174650:120912612091261209647522Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeRNA polymerase sigma-70 factor4e-1579.7
NC_010322:768849:785005785005785511507Pseudomonas putida GB-1 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 factor7e-1579.3
NC_005126:5188976:519303851930385193559522Photorhabdus luminescens subsp. laumondii TTO1, complete genomeRNA polymerase sigma-70 factor1e-1478.2
NC_015410:1324313:133080213308021331320519Pseudomonas mendocina NK-01 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 factor7e-1372.4
NC_016830:2168523:218617921861792186661483Pseudomonas fluorescens F113 chromosome, complete genomeprotein FpvI8e-1372.4
NC_015563:4093650:409834140983414098964624Delftia sp. Cs1-4 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 factor2e-1271.2
NC_014640:5047201:506631150663115066877567Achromobacter xylosoxidans A8 chromosome, complete genomeRNA polymerase sigma-24 subunit1e-1168.2
NC_016112:1735044:174948717494871749993507Methylomicrobium alcaliphilum chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit4e-1166.6
NC_014540:2908912:291046129104612911012552Burkholderia sp. CCGE1003 chromosome 2, complete sequenceRNA polymerase, sigma-24 subunit, ECF subfamily3e-1063.9
NC_007953:1088933:108893310889331089469537Burkholderia xenovorans LB400 chromosome 3, complete sequenceSigma-24 (FecI)9e-1062.4
NC_021150:2546000:254610825461082546812705Azotobacter vinelandii CA6, complete genomeRNA polymerase sigma factor, FecI family3e-0857.4
NC_012560:2546000:254609625460962546800705Azotobacter vinelandii DJ, complete genomeRNA polymerase sigma factor, FecI family3e-0857.4
NC_018691:359695:360597360597361097501Alcanivorax dieselolei B5 chromosome, complete genomeRNA polymerase sigma-70 factor, ECF subfamily4e-0856.6
NC_007677:241846:245884245884246468585Salinibacter ruber DSM 13855, complete genomepossible sigma-70 factor, ECF subfamily, putative1e-0755.5
NC_014032:269844:274798274798275382585Salinibacter ruber M8 chromosome, complete genomeRNA polymerase sigma factor2e-0754.3
NC_017075:1970168:197477419747741975262489Rubrivivax gelatinosus IL144, complete genomeECF subfamily RNA polymerase sigma-70 factor3e-0753.9
NC_015976:2150676:215816421581642158709546Sphingobium sp. SYK-6, complete genomeRNA polymerase ECF-type sigma factor3e-0753.9
NC_010510:339879:346474346474347019546Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, completeRNA polymerase, sigma-24 subunit, ECF subfamily6e-0753.1
NC_014305:97055:100558100558101007450Erwinia billingiae Eb661 plasmid pEB170, complete sequenceECF subfamily RNA polymerase sigma-70 factor1e-0652
NC_014375:1146328:117242311724231172977555Brevundimonas subvibrioides ATCC 15264 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-0650.8
NC_014640:5047201:506220250622025062732531Achromobacter xylosoxidans A8 chromosome, complete genomeRNA polymerase sigma factor FecI4e-0650.1
NC_007947:1429165:144176714417671442282516Methylobacillus flagellatus KT, complete genomesigma-24 (FecI-like)5e-0649.7
NC_015594:1210736:121573312157331216245513Sphingobium chlorophenolicum L-1 chromosome chromosome 2, completeECF subfamily RNA polymerase sigma-24 subunit9e-0648.9