Pre_GI: BLASTP Hits

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Query: NC_013410:2179342:2182000 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 2182000, End: 2183295, Length: 1296

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007722:2954876:2978971297897129802661296Erythrobacter litoralis HTCC2594, complete genomehypothetical protein2e-122439
NC_012778:748143:7637147637147650211308Eubacterium eligens ATCC 27750, complete genomehypothetical protein7e-110397
NC_008800:1300500:1314461131446113157681308Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,hypothetical protein6e-91335
NC_010803:1573849:1579699157969915809791281Chlorobium limicola DSM 245, complete genomeHipA domain protein1e-86320
NC_006512:2211654:2215113221511322164381326Idiomarina loihiensis L2TR, complete genomeUncharacterized conserved protein HipA3e-86319
NC_015160:2145915:2148043214804321495331491Odoribacter splanchnicus DSM 20712 chromosome, complete genomeHipA domain-containing protein6e-64245
NC_015160:2239933:2244469224446922459621494Odoribacter splanchnicus DSM 20712 chromosome, complete genomeHipA domain-containing protein3e-61236
NC_015510:644500:6500226500226512421221Haliscomenobacter hydrossis DSM 1100 chromosome, complete genomeHipA domain-containing protein1e-56221
NC_012483:1841000:1842843184284318440811239Acidobacterium capsulatum ATCC 51196, complete genomeHipA family protein6e-55215
NC_020304:3751710:3756878375687837581161239Desulfocapsa sulfexigens DSM 10523, complete genomeHipA-like protein2e-51203
NC_009663:1656804:1663154166315416643711218Sulfurovum sp. NBC37-1, complete genomehypothetical protein1e-49197
NC_012108:2874831:2874831287483128760901260Desulfobacterium autotrophicum HRM2, complete genomeputative capsule biosynthesis protein HipA5e-49195
NC_010995:4460413:4478850447885044801331284Cellvibrio japonicus Ueda107, complete genomehypothetical protein5e-42172
NC_016830:3230939:3234480323448032357511272Pseudomonas fluorescens F113 chromosome, complete genomeserine kinase HipA2e-35150
NC_009792:1479779:1482234148223414835021269Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein2e-34147
NC_009053:1942973:1952377195237719536331257Actinobacillus pleuropneumoniae L20, complete genomehypothetical protein1e-26121
NC_012108:4971086:4998654499865449999521299Desulfobacterium autotrophicum HRM2, complete genomehypothetical protein3e-25116
NC_016609:7608723:7622598762259876238781281Niastella koreensis GR20-10 chromosome, complete genomeHipA domain-containing protein1e-22108
NC_015497:4683741:4702719470271947039571239Glaciecola agarilytica 4H-3-7+YE-5 chromosome, complete genomeHipA domain protein8e-22105
NC_009615:2503465:2543269254326925445341266Parabacteroides distasonis ATCC 8503 chromosome, complete genomehypothetical protein4e-2099.4
NC_019973:5694620:5696342569634256976281287Mesorhizobium australicum WSM2073, complete genomecapsule biosynthesis enzymes related protein7e-2098.6
NC_015675:6276357:6322053632205363233391287Mesorhizobium opportunistum WSM2075 chromosome, complete genomeHipA domain-containing protein7e-2098.6
NC_014923:5765660:5767382576738257686681287Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completeHipA domain protein7e-2098.6
NC_014973:4174668:4196676419667641979261251Geobacter sp. M18 chromosome, complete genomeHipA domain-containing protein9e-2098.2
NC_004547:138500:1458011458011470511251Erwinia carotovora subsp. atroseptica SCRI1043, complete genomehypothetical protein4e-1996.3
NC_009943:1043210:1047736104773610489651230Candidatus Desulfococcus oleovorans Hxd3, complete genomeHipA domain protein4e-1996.3
NC_016816:3974895:3998338399833839995881251Pantoea ananatis LMG 5342, complete genomeHipA domain-containing protein6e-1995.5
NC_011060:244949:2596282596282608721245Pelodictyon phaeoclathratiforme BU-1, complete genomeHipA domain protein3e-1687
NC_002927:506183:5545445545445558391296Bordetella bronchiseptica RB50, complete genomehypothetical protein3e-1686.7
NC_016803:2431672:2455849245584924570991251Desulfovibrio desulfuricans ND132 chromosome, complete genomeHipA domain-containing protein5e-1582.8
NC_016589:2824164:2844132284413228454781347Burkholderia sp. YI23 chromosome 1, complete sequenceHipA domain-containing protein2e-1480.9
NC_010803:242705:2633172633172645641248Chlorobium limicola DSM 245, complete genomeHipA domain protein3e-1480.1
NC_008609:251608:2608462608462621381293Pelobacter propionicus DSM 2379, complete genomeHipA domain protein1e-1377.8
NC_014151:3797861:3802126380212638034031278Cellulomonas flavigena DSM 20109 chromosome, complete genomeHipA domain protein4e-1376.3
NC_010815:40357:4620246202474461245Geobacter lovleyi SZ plasmid pGLOV01, complete sequenceHipA domain protein4e-1376.3
NC_002939:2617037:2631147263114726323101164Geobacter sulfurreducens PCA, complete genomehypothetical protein7e-1375.5
NC_014923:5787493:5820141582014158213881248Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completeHipA domain protein3e-1273.2
NC_015675:6342164:6374812637481263760591248Mesorhizobium opportunistum WSM2075 chromosome, complete genomeHipA domain-containing protein3e-1273.2
NC_019973:5716453:5749101574910157503481248Mesorhizobium australicum WSM2073, complete genomeHipA-like protein3e-1273.2
NC_010725:3961981:3965622396562239669291308Methylobacterium populi BJ001, complete genomeHipA domain protein4e-1273.2
NC_015761:4355335:435570943557094356320612Salmonella bongori NCTC 12419, complete genomehypothetical protein7e-1272
NC_010814:294394:2995142995143008061293Geobacter lovleyi SZ, complete genomeHipA domain protein1e-1171.2
NC_009665:2352528:2362631236263123638931263Shewanella baltica OS185 chromosome, complete genomeHipA domain-containing protein2e-1170.9
NC_009615:322107:342432342432342878447Parabacteroides distasonis ATCC 8503 chromosome, complete genomehypothetical protein2e-1170.5
NC_004578:568236:5699455699455711711227Pseudomonas syringae pv. tomato str. DC3000, complete genomehypothetical protein2e-1067.4
NC_009337:715500:759958759958760914957Chlorobium phaeovibrioides DSM 265 chromosome, complete genomeHipA domain-containing protein3e-1066.6
NC_002929:52500:5924959249604751227Bordetella pertussis Tohama I, complete genomehypothetical protein8e-1065.5
NC_017223:51180:5924959249604751227Bordetella pertussis CS chromosome, complete genomehypothetical protein8e-1065.5
NC_002928:507749:5543395543395555291191Bordetella parapertussis 12822, complete genomehypothetical protein9e-1065.1
NC_011060:244949:256608256608257066459Pelodictyon phaeoclathratiforme BU-1, complete genomeHipA domain protein3e-0963.2
NC_010338:426388:4428394428394441311293Caulobacter sp. K31, complete genomeHipA domain protein2e-0757
NC_014216:3003347:3003347300334730045641218Desulfurivibrio alkaliphilus AHT2 chromosome, complete genomeHipA N-terminal domain protein9e-0755.1
NC_012918:356019:3612303612303624741245Geobacter sp. M21 chromosome, complete genomeHipA N-terminal domain-containing protein1e-0655.1