Pre_GI: BLASTP Hits

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Query: NC_012125:2826624:2845371 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Start: 2845371, End: 2846330, Length: 960

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_018012:1274500:128271112827111283664954Thiocystis violascens DSM 198 chromosome, complete genomehypothetical protein3e-35149
NC_021066:3201500:321332732133273214196870Raoultella ornithinolytica B6, complete genomehypothetical protein2e-1480.1
NC_013851:3142182:314937531493753150307933Allochromatium vinosum DSM 180 chromosome, complete genomehypothetical protein4e-36152
NC_020418:2868000:2883180288318028849131734Morganella morganii subsp. morganii KT, complete genomehypothetical protein4e-1065.9
NC_010338:4530403:454094645409464541869924Caulobacter sp. K31, complete genomehypothetical protein2e-32139
NC_006513:286549:2939752939752958941920Azoarcus sp. EbN1, complete genomeprobable RNA-directed DNA polymerase1e-0860.5
NC_013961:73037:834488344884434987Erwinia amylovora, complete genomeputative retron reverse transcriptase1e-1067.4
NC_011750:4307166:4329863432986343310261164Escherichia coli IAI39 chromosome, complete genomeputative retron-type reverse transcriptase4e-1272.4
NC_013959:83992:922959229593173879Sideroxydans lithotrophicus ES-1 chromosome, complete genomeputative reverse transcriptase3e-49195
NC_017075:1674758:169370016937001694443744Rubrivivax gelatinosus IL144, complete genomeputative RNA-directed DNA polymerase1e-37157
NC_015635:5222000:523243052324305233401972Microlunatus phosphovorus NM-1, complete genomeputative RNA-directed DNA polymerase4e-1065.9
NC_007606:3784847:380768838076883808197510Shigella dysenteriae Sd197, complete genomeputative RNA-directed DNA polymerase, msDNA specific9e-0961.2
NC_015856:3059737:3068580306858030697581179Collimonas fungivorans Ter331 chromosome, complete genomeretron reverse transcriptase2e-1066.6
NC_004578:4432983:4443121444312144443021182Pseudomonas syringae pv. tomato str. DC3000, complete genomeretron reverse transcriptase5e-0858.9
NC_014323:3292082:3299680329968033007141035Herbaspirillum seropedicae SmR1 chromosome, complete genomeretron reverse transcriptase2e-1170.1
NC_014910:242845:2767302767302777581029Alicycliphilus denitrificans BC chromosome, complete genomeretron reverse transcriptase8e-1581.3
NC_013421:1505176:151274715127471513718972Pectobacterium wasabiae WPP163, complete genomeretron reverse transcriptase2e-1067
NC_008781:1426285:143612114361211436630510Polaromonas naphthalenivorans CJ2, complete genomeretron reverse transcriptase4e-0755.8
NC_007645:6858465:6858465685846568597991335Hahella chejuensis KCTC 2396, complete genomeRetron-type reverse transcriptase4e-0755.8
NC_020304:3029243:303402230340223034798777Desulfocapsa sulfexigens DSM 10523, complete genomeRetron-type reverse transcriptase5e-0962
NC_018012:1789028:180004918000491801002954Thiocystis violascens DSM 198 chromosome, complete genomeRetron-type reverse transcriptase5e-0652
NC_016818:1795576:1804158180415818059991842Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completereverse transcriptase5e-1065.5
NC_016026:2082500:2097240209724020990481809Micavibrio aeruginosavorus ARL-13 chromosome, complete genomereverse transcriptase family protein3e-1169.7
NC_006905:2857699:286350128635012864460960Salmonella enterica subsp. enterica serovar Choleraesuis strreverse transcriptase-like protein0655
NC_013194:634039:6422706422706439851716Candidatus Accumulibacter phosphatis clade IIA str. UW-1, completeRibonuclease H5e-0962
NC_013440:1190832:1204684120468412063901707Haliangium ochraceum DSM 14365, complete genomeRibonuclease H2e-0859.7
NC_009659:892272:9039629039629049751014Janthinobacterium sp. Marseille chromosome, complete genomeRNA-directed DNA polymerase7e-1684.7
NC_013406:303218:3125503125503142201671Paenibacillus sp. Y412MC10 chromosome, complete genomeRNA-directed DNA polymerase2e-0963.5
NC_017188:3900951:3910501391050139122641764Bacillus amyloliquefaciens TA208 chromosome, complete genomeRNA-directed DNA polymerase1e-0551.2
NC_007347:1:687068707844975Ralstonia eutropha JMP134 chromosome 1, complete sequenceRNA-directed DNA polymerase4e-1685.5
NC_012947:2898179:290244829024482903410963Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeRNA-directed DNA polymerase2e-1067
NC_015164:2473496:2477601247760124790611461Bacteroides salanitronis DSM 18170 chromosome, complete genomeRNA-directed DNA polymerase4e-0858.9
NC_017191:3901914:3912193391219339139561764Bacillus amyloliquefaciens XH7 chromosome, complete genomeRNA-directed DNA polymerase1e-0551.2
NC_011883:2826000:2832835283283528346191785Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774,RNA-directed DNA polymerase1e-1274.3
NC_011601:4036590:406150440615044062463960Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeRNA-directed DNA polymerase7e-1271.6
NC_012918:928903:9532789532789544111134Geobacter sp. M21 chromosome, complete genomeRNA-directed DNA polymerase3e-0859.3
NC_015496:3256372:3267584326758432686031020Krokinobacter diaphorus 4H-3-7-5 chromosome, complete genomeRNA-directed DNA polymerase1e-1584
NC_009973:178000:2176542176542194081755Herpetosiphon aurantiacus ATCC 23779 plasmid pHAU01, completeRNA-directed DNA polymerase8e-1374.7
NC_010688:673454:6822916822916839851695Xanthomonas campestris pv. campestris, complete genomeRNA-directed DNA polymerase2e-0756.6
NC_012108:2159230:217027321702732171157885Desulfobacterium autotrophicum HRM2, complete genomeRNA-directed DNA polymerase (retron-type reverse transcriptase)1e-21103
NC_012691:779826:7885707885707896011032Tolumonas auensis DSM 9187, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)2e-1479.7
NC_010334:609636:620220620220621074855Shewanella halifaxensis HAW-EB4, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)3e-1272.8
NC_013889:1514799:1529559152955915307431185Thioalkalivibrio sp. K90mix chromosome, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)4e-0755.8
NC_007963:1370903:1378303137830313793341032Chromohalobacter salexigens DSM 3043, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)6e-1272
NC_010501:3987615:4002391400239140035151125Pseudomonas putida W619, complete genomeRNA-directed DNA polymerase (reverse transcriptase)6e-0755.1