Pre_GI: BLASTP Hits

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Query: NC_011080:2982346:3026194 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 3026194, End: 3026688, Length: 495

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011205:3078732:309243730924373092931495Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein9e-94341
NC_016831:2867766:290997029099702910464495Salmonella enterica subsp. enterica serovar Gallinarum/pullorummembrane protein4e-93339
NC_011294:2919906:293270629327062933200495Salmonella enterica subsp. enterica serovar Enteritidis strmembrane protein4e-93339
NC_011149:2912219:295810229581022958596495Salmonella enterica subsp. enterica serovar Agona str. SL483,hypothetical protein5e-93339
NC_010102:2967464:301266530126653013159495Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein9e-93338
NC_012125:2938519:298195529819552982449495Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein2e-92337
NC_006905:2987863:300157330015733002067495Salmonella enterica subsp. enterica serovar Choleraesuis strhypothetical protein7e-92335
NC_011274:2909799:292351029235102924004495Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein8e-92335
NC_003197:3005842:304959930495993050120522Salmonella typhimurium LT2, complete genomeputative cytoplasmic protein6e-1580.1
NC_016810:3028421:307217530721753072696522Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein6e-1580.1
NC_016856:3026426:306983630698363070357522Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative cytoplasmic protein6e-1580.1
NC_016857:3028421:307217530721753072696522Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative cytoplasmic protein6e-1580.1
NC_016863:2974333:301808930180893018610522Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative cytoplasmic protein6e-1580.1
NC_011094:2913500:295493629549362955457522Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein5e-1580.1
NC_016860:3029272:307302930730293073214186Salmonella enterica subsp. enterica serovar Typhimurium strputative cytoplasmic protein1e-1479
NC_011083:3009760:302420430242043024389186Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,putative cytoplasmic protein1e-1479
NC_003198:2856596:290006629000662900251186Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein9e-1476.3
NC_006511:2819128:286260828626082862793186Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein9e-1476.3
NC_004631:2872192:288592328859232886108186Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein9e-1476.3
NC_011147:2814664:285814428581442858329186Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein9e-1476.3
NC_017046:3027161:307091530709153071022108Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein2e-1272