Pre_GI: BLASTP Hits

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Query: NC_009512:4375452:4376391 Pseudomonas putida F1, complete genome

Start: 4376391, End: 4377392, Length: 1002

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain was isolated from a polluted creek in Urbana, Illinois, USA by enrichment culture with ethylbenzyne as a sole source of carbon and energy. Its ability to degrade several different compounds including benzene, toluene, and ethylbenzene makes this species useful in the bioremediation of sites contaminated with multiple aromatic hydrocarbons. Underground gasoline tanks which have developed leaks can contaminate soil and water with a variety of these compounds. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017986:1128879:1133051113305111340521002Pseudomonas putida ND6 chromosome, complete genomeAlcohol dehydrogenase, zinc-containing0634
NC_016830:4914406:4933024493302449340281005Pseudomonas fluorescens F113 chromosome, complete genomeoxidoreductase2e-149528
NC_015379:5002595:5021088502108850220921005Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,Putative oxidoreductase2e-149528
NC_009656:3733913:3753978375397837549821005Pseudomonas aeruginosa PA7 chromosome, complete genomeoxidoreductase3e-140498
NC_014472:3530274:3539306353930635403131008Flavobacteriales bacterium HTCC2170 chromosome, complete genomeputative NADP-dependent oxidoreductase6e-111400
NC_015566:3269469:3273833327383332748671035Serratia sp. AS12 chromosome, complete genome2-alkenal reductase2e-78293
NC_009848:775000:7750667750667760701005Bacillus pumilus SAFR-032, complete genomeNADP-dependent dehydrogenase3e-75282
NC_008258:1784637:1804487180448718055901104Shigella flexneri 5 str. 8401, complete genomeputative oxidoreductase3e-74278
NC_017328:1835108:1857742185774218588721131Shigella flexneri 2002017 chromosome, complete genomeputative oxidoreductase4e-74278
NC_004337:1783645:1805163180516318063591197Shigella flexneri 2a str. 301, complete genomeputative oxidoreductase2e-73276
NC_012759:1409086:1409086140908614101471062Escherichia coli BW2952 chromosome, complete genomeputative oxidoreductase, Zn-dependent and NAD(P)-binding1e-72273
NC_010473:1607646:1607646160764616086831038Escherichia coli str. K-12 substr. DH10B, complete genomepredicted oxidoreductase, Zn-dependent and NAD(P)-binding1e-72273
NC_000913:1517051:1517051151705115180881038Escherichia coli K12, complete genomepredicted oxidoreductase, Zn-dependent and NAD(P)-binding1e-72273
NC_013421:553193:5593395593395603761038Pectobacterium wasabiae WPP163, complete genomeAlcohol dehydrogenase zinc-binding domain protein4e-72271
NC_002947:2809591:2822425282242528234591035Pseudomonas putida KT2440, complete genomealcohol dehydrogenase, zinc-containing2e-69263
NC_013508:876431:8832918832918843221032Edwardsiella tarda EIB202, complete genomeputative NADP-dependent oxidoreductase9e-69260
NC_017033:1939507:1961821196182119628611041Frateuria aurantia DSM 6220 chromosome, complete genomeputative NADP-dependent oxidoreductase6e-64244
NC_012779:916000:918589918589919563975Edwardsiella ictaluri 93-146, complete genomehypothetical protein2e-62239
NC_010551:2007926:201314120131412014139999Burkholderia ambifaria MC40-6 chromosome 1, complete sequenceAlcohol dehydrogenase zinc-binding domain protein2e-62239
NC_015856:2646816:2646816264681626480181203Collimonas fungivorans Ter331 chromosome, complete genomealcohol dehydrogenase, zinc-binding protein2e-56219
NC_013169:1759900:1774669177466917756791011Kytococcus sedentarius DSM 20547, complete genomepredicted NADP-dependent oxidoreductase7e-55214
NC_008268:7485710:7495277749527774962871011Rhodococcus sp. RHA1, complete genomepossible NADP-dependent oxidoreductase3e-53209
NC_014006:1862000:187903318790331880025993Sphingobium japonicum UT26S chromosome 1, complete genomeputative 2-alkenal reductase4e-51202
NC_016027:2580477:2582141258214125831811041Gluconacetobacter xylinus NBRC 3288, complete genomeNADP-dependent oxidoreductase L4BD family5e-48191
NC_013235:5127148:5131807513180751328291023Nakamurella multipartita DSM 44233, complete genomeAlcohol dehydrogenase zinc-binding domain protein7e-46184
NC_014722:1497244:151062815106281511338711Burkholderia rhizoxinica HKI 454, complete genomeNADP-DEPENDENT OXIDOREDUCTASE2e-34146
NC_007511:1780500:1783268178326817843111044Burkholderia sp. 383 chromosome 2, complete sequenceZinc-containing alcohol dehydrogenase superfamily6e-23108
NC_012982:1569426:1578683157868315796901008Hirschia baltica ATCC 49814, complete genomeAlcohol dehydrogenase zinc-binding domain protein2e-1790.5
NC_011420:2803196:282094828209482821922975Rhodospirillum centenum SW, complete genomeoxidoreductase, zinc-binding dehydrogenase family7e-1375.1
NC_007511:1681764:168079416807941681786993Burkholderia sp. 383 chromosome 2, complete sequenceZinc-containing alcohol dehydrogenase superfamily4e-0962.8
NC_017955:2494640:253401225340122534968957Modestobacter marinus, complete genomealcohol dehydrogenase4e-0962.8
NC_018868:4010615:401061540106154011592978Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomezinc-containing alcohol dehydrogenase1e-0861.2
NC_012522:7871173:787203878720387873021984Rhodococcus opacus B4, complete genomeputative oxidoreductase5e-0755.5
NC_014830:3438504:3467438346743834684691032Intrasporangium calvum DSM 43043 chromosome, complete genomeAlcohol dehydrogenase zinc-binding domain protein1e-0654.3
NC_016582:5393568:541186054118605412789930Streptomyces bingchenggensis BCW-1 chromosome, complete genomealcohol dehydrogenase GroES domain-containing protein3e-0652.8
NC_007005:321695:332888332888333874987Pseudomonas syringae pv. syringae B728a, complete genomeZinc-containing alcohol dehydrogenase superfamily5e-0652.4
NC_007492:3801237:381308138130813814076996Pseudomonas fluorescens PfO-1, complete genomeZinc-containing alcohol dehydrogenase superfamily5e-0652.4
NC_007778:5079500:508124150812415082239999Rhodopseudomonas palustris HaA2, complete genomeAlcohol dehydrogenase superfamily, zinc-containing9e-0651.2
NC_010623:1961685:199093119909311991926996Burkholderia phymatum STM815 chromosome 2, complete sequenceAlcohol dehydrogenase zinc-binding domain protein1e-0551.2