Query: NC_007952:3196085 Burkholderia xenovorans LB400 chromosome 2, complete sequence
Start: 3196085, End: 3233995, Length: 37911
Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria
General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_010170:4196197* | 4196197 | 4225724 | 29528 | Bordetella petrii, complete genome | 0 | 2107 | BLASTN svg | BLASTP svg |
NC_010170:4533416* | 4533416 | 4566744 | 33329 | Bordetella petrii, complete genome | 0 | 2103 | BLASTN svg | BLASTP svg |
NC_010170:3944228 | 3944228 | 3994783 | 50556 | Bordetella petrii, complete genome | 0 | 2103 | BLASTN svg | BLASTP svg |
NC_010170:3908500* | 3908500 | 3941949 | 33450 | Bordetella petrii, complete genome | 0 | 2103 | BLASTN svg | BLASTP svg |
NC_010170:209514 | 209514 | 236494 | 26981 | Bordetella petrii, complete genome | 0 | 2103 | BLASTN svg | BLASTP svg |
NC_010170:1498253* | 1498253 | 1546381 | 48129 | Bordetella petrii, complete genome | 0 | 2103 | BLASTN svg | BLASTP svg |
NC_010170:1324758* | 1324758 | 1373446 | 48689 | Bordetella petrii, complete genome | 0 | 2103 | BLASTN svg | BLASTP svg |
NC_007951:1928906 | 1928906 | 1952863 | 23958 | Burkholderia xenovorans LB400 chromosome 1, complete sequence | 2e-88 | 335 | BLASTN svg | BLASTP svg |
NC_008060:2913671* | 2913671 | 2947089 | 33419 | Burkholderia cenocepacia AU 1054 chromosome 1, complete sequence | 9e-23 | 117 | BLASTN svg | BLASTP svg |
NC_007951:769500 | 769500 | 796720 | 27221 | Burkholderia xenovorans LB400 chromosome 1, complete sequence | 3e-22 | 115 | BLASTN svg | BLASTP svg |
NC_007434:1322500 | 1322500 | 1354599 | 32100 | Burkholderia pseudomallei 1710b chromosome I, complete sequence | 5e-21 | 111 | BLASTN svg | BLASTP svg |
NC_009439:3770282 | 3770282 | 3801772 | 31491 | Pseudomonas mendocina ymp, complete genome | 3e-19 | 105 | BLASTN svg | BLASTP svg |
NC_010087:319063 | 319063 | 367599 | 48537 | Burkholderia multivorans ATCC 17616 chromosome 3, complete | 1e-18 | 103 | BLASTN svg | BLASTP svg |
NC_014910:1200605 | 1200605 | 1220466 | 19862 | Alicycliphilus denitrificans BC chromosome, complete genome | 1e-18 | 103 | BLASTN svg | BLASTP svg |
NC_010804:2206000* | 2206000 | 2228934 | 22935 | Burkholderia multivorans ATCC 17616 chromosome 1, complete | 1e-18 | 103 | BLASTN svg | BLASTP svg |
NC_010801:550270 | 550270 | 596634 | 46365 | Burkholderia multivorans ATCC 17616 chromosome 3, complete | 1e-18 | 103 | BLASTN svg | BLASTP svg |
NC_007951:2206263* | 2206263 | 2227846 | 21584 | Burkholderia xenovorans LB400 chromosome 1, complete sequence | 2e-17 | 99.6 | BLASTN svg | BLASTP svg |
NC_009434:3611738* | 3611738 | 3748875 | 137138 | Pseudomonas stutzeri A1501, complete genome | 1e-15 | 93.7 | BLASTN svg | BLASTP svg |
NC_008786:2850736 | 2850736 | 2878954 | 28219 | Verminephrobacter eiseniae EF01-2, complete genome | 3e-13 | 85.7 | BLASTN svg | BLASTP svg |
NC_007974:2048000* | 2048000 | 2092107 | 44108 | Ralstonia metallidurans CH34 chromosome 2, complete sequence | 1e-12 | 83.8 | BLASTN svg | BLASTP svg |
NC_007974:138176 | 138176 | 173233 | 35058 | Ralstonia metallidurans CH34 chromosome 2, complete sequence | 1e-12 | 83.8 | BLASTN svg | BLASTP svg |
NC_007974:1135863 | 1135863 | 1158373 | 22511 | Ralstonia metallidurans CH34 chromosome 2, complete sequence | 1e-12 | 83.8 | BLASTN svg | BLASTP svg |
NC_008463:2467219* | 2467219 | 2503392 | 36174 | Pseudomonas aeruginosa UCBPP-PA14, complete genome | 5e-12 | 81.8 | BLASTN svg | BLASTP svg |
NC_007347:3204637 | 3204637 | 3235485 | 30849 | Ralstonia eutropha JMP134 chromosome 1, complete sequence | 2e-08 | 69.9 | BLASTN svg | BLASTP svg |
NC_003295:3421520 | 3421520 | 3485364 | 63845 | Ralstonia solanacearum GMI1000, complete genome | 7e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_003295:1654000 | 1654000 | 1676176 | 22177 | Ralstonia solanacearum GMI1000, complete genome | 3e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_003296:673790 | 673790 | 726099 | 52310 | Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, complete | 3e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_007498:1562270 | 1562270 | 1584560 | 22291 | Pelobacter carbinolicus DSM 2380, complete genome | 3e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_010660:86445 | 86445 | 109420 | 22976 | Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequence | 1e-06 | 63.9 | BLASTN svg | BLASTP svg |
NC_010658:1772994* | 1772994 | 1795099 | 22106 | Shigella boydii CDC 3083-94, complete genome | 1e-06 | 63.9 | BLASTN svg | BLASTP svg |
NC_010623:1961685 | 1961685 | 2041599 | 79915 | Burkholderia phymatum STM815 chromosome 2, complete sequence | 1e-06 | 63.9 | BLASTN svg | BLASTP svg |
NC_008253:3941938* | 3941938 | 3998838 | 56901 | Escherichia coli 536, complete genome | 1e-06 | 63.9 | BLASTN svg | BLASTP svg |
NC_007607:87000 | 87000 | 123628 | 36629 | Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequence | 1e-06 | 63.9 | BLASTN svg | BLASTP svg |
NC_007384:1763375 | 1763375 | 1783599 | 20225 | Shigella sonnei Ss046, complete genome | 1e-06 | 63.9 | BLASTN svg | BLASTP svg |