Pre_GI: BLASTP Hits

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Query: NC_004741:366822:373741 Shigella flexneri 2a str. 2457T, complete genome

Start: 373741, End: 375471, Length: 1731

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This is a highly virulent strain that has been widely used for genetic and clinical research. Causes enteric disease. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017328:385552:3924713924713942011731Shigella flexneri 2002017 chromosome, complete genomehypothetical protein01150
NC_004337:367687:3746073746073763371731Shigella flexneri 2a str. 301, complete genomehypothetical protein01150
NC_008258:401786:4087054087054104351731Shigella flexneri 5 str. 8401, complete genomehypothetical protein01148
NC_016831:947281:9496409496409513701731Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein9e-156550
NC_011294:2053991:2092084209208420938141731Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein9e-156550
NC_011149:1987291:2032506203250620342361731Salmonella enterica subsp. enterica serovar Agona str. SL483,putative periplasmic protein1e-155550
NC_011274:2044000:2083217208321720849471731Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein1e-155550
NC_010102:997417:9974179974179991471731Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein6e-155548
NC_011205:2180598:2219097221909722208271731Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein9e-155547
NC_010465:2428620:2445854244585424475721719Yersinia pseudotuberculosis YPIII, complete genomehypothetical protein1e-124447
NC_009708:2392640:2409887240988724116051719Yersinia pseudotuberculosis IP 31758 chromosome, complete genomehypothetical protein3e-124446
NC_017265:2263347:2280620228062022822781659Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,hypothetical protein4e-123442
NC_014029:2335021:2353650235365023553081659Yersinia pestis Z176003 chromosome, complete genomehypothetical protein4e-123442
NC_004088:2541033:2559662255966225613201659Yersinia pestis KIM, complete genomehypothetical protein4e-123442