Pre_GI: BLASTP Hits

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Query: NC_004578:1719849:1722961 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 1722961, End: 1723434, Length: 474

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012673:1600242:159977215997721600245474Exiguobacterium sp. AT1b, complete genome2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase2e-46184
NC_014562:2563466:260747126074712607956486Pantoea vagans C9-1 chromosome, complete genome2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase4e-46183
NC_010468:1029471:105210410521041052583480Escherichia coli ATCC 8739, complete genome2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase4e-46183
NC_002940:1065246:108655310865531087035483Haemophilus ducreyi 35000HP, complete genome2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase1e-44178
NC_010995:2547164:255755525575552558034480Cellvibrio japonicus Ueda107, complete genome2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase2e-44177
NC_016445:2938887:297179729717972972273477Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, complete2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase3e-43174
NC_008601:1151653:117192011719201172399480Francisella tularensis subsp. novicida U112, complete genome2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase2e-43174
NC_002570:126500:142151142151142624474Bacillus halodurans C-125, complete genome2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase2e-43174
NC_014624:3810163:383352138335213834003483Eubacterium limosum KIST612 chromosome, complete genomehypothetical protein6e-43172
NC_010382:4479464:448873244887324489208477Lysinibacillus sphaericus C3-41, complete genome2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase3e-41167
NC_007984:221030:223856223856224332477Baumannia cicadellinicola str. Hc (Homalodisca coagulata), complete2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase2e-40164
NC_007604:1183497:120383712038371204319483Synechococcus elongatus PCC 7942, complete genomeMECDP-synthase4e-40163
NC_006576:414696:416486416486416968483Synechococcus elongatus PCC 6301, complete genome2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase4e-40163
NC_016632:285408:298703298703299170468Serratia symbiotica str. 'Cinara cedri' chromosome, complete2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase2e-39160
NC_016043:471719:493003493003493488486Taylorella asinigenitalis MCE3 chromosome, complete genome2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase8e-39159
NC_012751:1538500:155588415558841556369486Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), complete2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase5e-39159
NC_015275:3243689:325067432506743251153480Clostridium lentocellum DSM 5427 chromosome, complete genome2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase3e-38157
NC_009633:4563877:460502846050284605507480Alkaliphilus metalliredigens QYMF chromosome, complete genome2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase1e-37155
NC_005085:1269787:132359813235981324074477Chromobacterium violaceum ATCC 12472, complete genome2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase2e-37154
NC_014393:187454:204870204870205337468Clostridium cellulovorans 743B chromosome, complete genome2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase3e-37154
NC_015738:838715:860695860695861201507Eggerthella sp. YY7918, complete genomehypothetical protein1e-36152
NC_014632:1914500:193903819390381939517480Ilyobacter polytropus DSM 2926 chromosome, complete genome2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase5e-35146
NC_003228:4449072:446346544634654463944480Bacteroides fragilis NCTC 9343, complete genomeputative 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase1e-34145
NC_006347:4562242:457746945774694577948480Bacteroides fragilis YCH46, complete genome2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase7e-35145
NC_016776:4525065:454359445435944544073480Bacteroides fragilis 638R, complete genomeputative 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase7e-35145
NC_006138:273237:2770292770292783301302Desulfotalea psychrophila LSv54, complete genomesimilar to IspD/IspF bifunctional enzyme (Rhodobacter capsulatus)9e-34142
NC_008344:1364142:136536113653611365864504Nitrosomonas eutropha C91, complete genome2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase1e-33142
NC_014378:131810:154001154001154483483Acetohalobium arabaticum DSM 5501 chromosome, complete genome2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase4e-33140
NC_014109:27500:334653346533953489Candidatus Riesia pediculicola USDA chromosome, complete genome2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase7e-33139
NC_019903:421000:435723435723436202480Desulfitobacterium dichloroeliminans LMG P-21439 chromosome,2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase1e-32138
NC_011899:86800:111733111733112230498Halothermothrix orenii H 168, complete genome2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase1e-32138
NC_016024:1974715:198998619899861990477492Candidatus Chloracidobacterium thermophilum B chromosome chromosome2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase4e-31133
NC_005090:1812833:1835616183561618367551140Wolinella succinogenes DSM 1740, complete genomebifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein6e-31132
NC_009455:53000:554885548855961474Dehalococcoides sp. BAV1 chromosome, complete genome2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase1e-30132
NC_019970:336472:356748356748357230483Thermoanaerobacterium thermosaccharolyticum M0795, complete genome2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase2e-30130
NC_013890:53538:556085560856081474Dehalococcoides sp. GT chromosome, complete genome2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase4e-30130
NC_007356:51080:560695606956542474Dehalococcoides sp. CBDB1, complete genome2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase4e-30130
NC_012988:4387735:439113743911374391871735Methylobacterium extorquens DM4, complete genome2-C-methyl-D-erythritol-2,4-cyclodiphosphate synthase1e-29129
NC_007519:1782067:1783902178390217851011200Desulfovibrio alaskensis G20 chromosome, complete genome2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase5e-27119
NC_013009:122000:122009122009122515507Neorickettsia risticii str. Illinois, complete genome2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase4e-26117
NC_016633:1353458:135812913581291358611483Sphaerochaeta pleomorpha str. Grapes chromosome, complete genome2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase2e-26117
NC_015064:1268223:126920712692071269821615Acidobacterium sp. MP5ACTX9 chromosome, complete genome2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase4e-25113
NC_004344:589375:614360614360614833474Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis,hypothetical protein2e-24111
NC_011297:1296968:130107113010711301568498Dictyoglomus thermophilum H-6-12, complete genome2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase1e-22105
NC_006832:160222:160222160222160776555Ehrlichia ruminantium str. Welgevonden, complete genome2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase3e-22103
NC_015682:205900:242018242018242494477Thermodesulfobacterium sp. OPB45 chromosome, complete genome2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase6e-22103
NC_006831:157895:157895157895158449555Ehrlichia ruminantium str. Gardel, complete genome2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase1e-21102
NC_016148:951446:9724609724609736141155Thermovirga lienii DSM 17291 chromosome, complete genome2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase4e-21100
NC_021508:546592:5490755490755503221248Treponema pallidum subsp. pallidum SS14, complete genomebifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase1e-1995.5
NC_016842:546661:5491445491445503911248Treponema pallidum subsp. pertenue str. SamoaD chromosome, completebifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase1e-1995.5
NC_016843:547149:5496325496325508791248Treponema pallidum subsp. pertenue str. Gauthier chromosome,bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase1e-1995.5
NC_016848:547115:5495985495985508451248Treponema pallidum subsp. pertenue str. CDC2 chromosome, completebifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase1e-1995.5
NC_000919:545141:5476725476725488711200Treponema pallidum subsp. pallidum str. Nichols, complete genomehypothetical protein1e-1995.5
NC_010741:546573:5490565490565503031248Treponema pallidum subsp. pallidum SS14, complete genomehypothetical protein1e-1995.5
NC_016844:547069:5495525495525507991248Treponema pallidum subsp. pallidum DAL-1 chromosome, completebifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase1e-1995.5
NC_017268:546376:5488595488595501061248Treponema pallidum subsp. pallidum str. Chicago chromosome,bifunctional enzyme IspD/ispF1e-1995.5
NC_015714:542679:5451615451615464081248Treponema paraluiscuniculi Cuniculi A chromosome, complete genomebifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase2e-1994.7
NC_015635:5222000:523816152381615238652492Microlunatus phosphovorus NM-1, complete genome2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase5e-1993.6
NC_005835:1345790:136145713614571361915459Thermus thermophilus HB27, complete genome2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase6e-1889.7
NC_010003:1242846:125743212574321257920489Petrotoga mobilis SJ95, complete genome2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase1e-1789
NC_012785:1988527:200348820034882003958471Kosmotoga olearia TBF 19.5.1, complete genome2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase1e-1169.3
NC_004432:1310322:134122713412271341724498Mycoplasma penetrans HF-2, complete genomeputative enzyme of deoxy-xylulose pathway YgbB1e-0962
NC_011653:466007:470919470919471917999Thermosipho africanus TCF52B, complete genome2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase family protein, putative1e-0549.3