Pre_GI Gene

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Host: NC_013890 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_013890:53538 Dehalococcoides sp. GT chromosome, complete genome

Host Lineage: Dehalococcoides mccartyi; Dehalococcoides; Dehalococcoidaceae; Dehalococcoidales; Chloroflexi; Bacteria

General Information: Temp: Mesophile; Habitat: Fresh water, Groundwater. Dehalococcoides sp. GT was isolated from an chloroethene-contaminated aquifer. This strain can dechlorinate trichloroethene and vinyl chloride. This organism was isolated from environments contaminated with organic chlorinated chemicals such as tetrachloroethene (PCE) and trichloroethane (TCE), common contaminants in the anaerobic subsurface. There are at least 15 organisms from different metabolic groups, halorespirators, acetogens, methanogens and facultative anaerobes, that are able to metabolize PCE. Some of these organisms couple dehalogenation to energy conservation and utilize PCE as the only source of energy while others dehalogenate tetrachloroethene fortuitously. This non-methanogenic, non-acetogenic culture is able to grow with hydrogen as the electron donor, indicating that hydrogen/PCE serves as an electron donor/acceptor for energy conservation and growth. This organism can only grow anaerobically in the presence of hydrogen as an electron donor and chlorinated compounds as electron acceptors. Dehalococcoides ethenogenes is typically found at sites contaminated with chlorinated solvents, and have been independently isolated in dozens of sites across the USA.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
53538549321395DNA repair protein RadAQuickGO ontologyBLASTP
54919556026842-C-methyl-D-erythritol 4-phosphate cytidylyltransferaseQuickGO ontologyBLASTP
55608560814742C-methyl-D-erythritol 24-cyclodiphosphate synthaseQuickGO ontologyBLASTP
56085575421458cysteinyl-tRNA synthetaseQuickGO ontologyBLASTP
575635763876tRNA-AlaQuickGO ontologyBLASTP
5793158845915hypothetical proteinBLASTP
5885559325471hypothetical protein
59373608391467hypothetical proteinBLASTP
6083261632801hypothetical protein
6177962447669hypothetical protein
62485645272043Endopeptidase LaQuickGO ontologyBLASTP
64577674862910PglZ domain proteinQuickGO ontology
67499718394341hypothetical protein
7185872637780hypothetical proteinBLASTP
72677750702394DNA methylase N-4N-6 domain proteinQuickGO ontologyBLASTP
7507375597525hypothetical protein
75594767541161DNA repair protein-like proteinQuickGO ontologyBLASTP
7676776967201phage transcriptional regulator AlpAQuickGO ontologyBLASTP
7722277707486hypothetical proteinBLASTP
7774978066318hypothetical proteinBLASTP
7812178603483hypothetical proteinBLASTP
7867379008336hypothetical proteinBLASTP
7907379261189hypothetical proteinBLASTP
79587808461260DNA polymerase III beta chainQuickGO ontologyBLASTP
8099181596606hypothetical proteinBLASTP
8194082656717hypothetical proteinBLASTP
8267683212537hypothetical proteinBLASTP