Pre_GI: BLASTP Hits

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Query: NC_004349:3938:11335 Shewanella oneidensis MR-1 plasmid pMR-1, complete sequence

Start: 11335, End: 11739, Length: 405

Host Lineage: Shewanella oneidensis; Shewanella; Shewanellaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: This strain was isolated from Oneida lake in New York, USA. Potential bioremediation organism. This genus includes species that inhabit a wide range of environments and are capable of utilizing a wide variety of electron acceptors during anaerobic respiration including some insoluble metal oxides while using very few carbon sources such as lactate or acetate. This group of organisms have been studied extensively for their electron transport systems. This organism is a facultative anaerobe that is capable of using a wide variety of terminal electron acceptors during anaerobic respiration which may make it valuable for bioremediation. Since the bacteria can reduce chromium and uranium from the liquid phase to form insoluble compounds, they may be used to eliminate these two environmental pollutants from water.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003198:4453457:44737534473753450773033978Salmonella enterica subsp. enterica serovar Typhi str. CT18,9e-1372.4
NC_005966:2653945:267389626738962674522627Acinetobacter sp. ADP1, complete genomecomponent of DNA polymerase V6e-1166.2
NC_013446:2961647:297934429793442979754411Comamonas testosteroni CNB-2, complete genomeDNA polymerase V1e-0961.6
NC_007604:1586243:160612916061291606689561Synechococcus elongatus PCC 7942, complete genomeDNA polymerase V3e-1683.6
NC_006576:2683467:709970997659561Synechococcus elongatus PCC 6301, complete genomeDNA polymerase V3e-1683.6
NC_016445:89500:106849106849107298450Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completeDNA polymerase V6e-1579.7
NC_014305:97055:112117112117112545429Erwinia billingiae Eb661 plasmid pEB170, complete sequenceDNA polymerase V subunit3e-1684
NC_012988:4262631:426666942666694267061393Methylobacterium extorquens DM4, complete genomeDNA polymerase V subunit D9e-1268.9
NC_012967:1205985:123091712309171231336420Escherichia coli B str. REL606 chromosome, complete genomeDNA polymerase V subunit UmuD7e-1992.4
NC_009648:1541699:159551215955121595931420Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeDNA polymerase V subunit UmuD4e-1786.7
NC_017047:1934430:194357819435781944000423Rahnella aquatilis HX2 chromosome, complete genomeDNA polymerase V subunit UmuD2e-1581.3
NC_011601:1315746:133733613373361337755420Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeDNA polymerase V subunit UmuD4e-1890.1
NC_011283:3177350:318657131865713187053483Klebsiella pneumoniae 342 chromosome, complete genomeDNA polymerase V subunit UmuD4e-1786.7
NC_016856:2085283:209256820925682092987420Salmonella enterica subsp. enterica serovar Typhimurium str. 14028SDNA polymerase V subunit UmuD1e-1685.1
NC_009436:2395913:240450524045052404924420Enterobacter sp. 638, complete genomeDNA polymerase V subunit UmuD2e-1684.7
NC_011745:1287714:131060513106051311024420Escherichia coli ED1a chromosome, complete genomeDNA polymerase V subunit UmuD5e-1992.8
NC_016857:2027311:203873120387312039150420Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74DNA polymerase V subunit UmuD1e-1685.1
NC_021066:1778000:178527517852751785694420Raoultella ornithinolytica B6, complete genomeDNA polymerase V subunit UmuD6e-1476.3
NC_011751:1446073:147704214770421477461420Escherichia coli UMN026 chromosome, complete genomeDNA polymerase V subunit UmuD7e-1992.4
NC_011742:1221416:124553912455391245958420Escherichia coli S88 chromosome, complete genomeDNA polymerase V subunit UmuD1e-1891.7
NC_011283:2836000:289026328902632890745483Klebsiella pneumoniae 342 chromosome, complete genomeDNA polymerase V subunit UmuD4e-1786.7
NC_016863:2029340:204076020407602041179420Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1DNA polymerase V subunit UmuD1e-1685.1
NC_020260:1293860:130024713002471300684438Cronobacter sakazakii Sp291, complete genomeDNA polymerase V subunit UmuD4e-1683.2
NC_010473:1245284:127023112702311270650420Escherichia coli str. K-12 substr. DH10B, complete genomeDNA polymerase V, subunit D7e-1992.4
NC_016810:2027311:203873120387312039150420Salmonella enterica subsp. enterica serovar Typhimurium strDNA repair protein1e-1685.1
NC_010554:2646806:272478627247862725235450Proteus mirabilis HI4320, complete genomeDNA repair protein8e-1682.4
NC_015761:1599000:160588716058871606315429Salmonella bongori NCTC 12419, complete genomeDNA repair protein1e-1581.6
NC_020418:2868000:288122828812282881533306Morganella morganii subsp. morganii KT, complete genomeError-prone repair protein UmuD3e-0857
NC_012668:3037345:303929130392913039740450Vibrio cholerae MJ-1236 chromosome 1, complete sequenceerror-prone repair protein UmuD6e-1579.7
NC_006347:2190000:219226021922602192703444Bacteroides fragilis YCH46, complete genomeerror-prone repair: SOS-response transcriptional repressor UmuD homolog2e-1374.7
NC_014532:3596097:362965336296533630096444Halomonas elongata DSM 2581, complete genomehypothetical protein5e-1992.8
NC_009792:1739970:174737317473731747789417Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein1e-1581.6
NC_009997:2352948:237442223744222374697276Shewanella baltica OS195, complete genomehypothetical protein2e-1787.4
NC_006856:95830:100863100863101300438Salmonella enterica subsp. enterica serovar Choleraesuis strImpA7e-1475.9
NC_014910:1591003:160300516030051603586582Alicycliphilus denitrificans BC chromosome, complete genomelexa repressor3e-0960.8
NC_010278:1235934:125094312509431251575633Actinobacillus pleuropneumoniae serovar 3 str. JL03 chromosome,LexA repressor4e-0856.6
NC_012034:6469:3152031520339792460Anaerocellum thermophilum DSM 6725, complete genomeLexA repressor2e-0650.8
NC_014910:1200605:121068612106861211267582Alicycliphilus denitrificans BC chromosome, complete genomelexa repressor2e-0961.6
NC_014720:4170:2587325873283322460Caldicellulosiruptor kronotskyensis 2002 chromosome, completelexa repressor5e-0649.7
NC_006370:166000:169235169235169813579Photobacterium profundum SS9 chromosome 1, complete sequenceLexA repressor4e-0650.4
NC_015224:4101939:411302441130244113632609Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,LexA repressor1e-0961.6
NC_017986:5605197:563727956372795637887609Pseudomonas putida ND6 chromosome, complete genomeLexA repressor8e-0855.8
NC_010519:796229:820381820381821013633Haemophilus somnus 2336 chromosome, complete genomeLexA repressor4e-0753.1
NC_016002:1741109:175018817501881750616429Pseudogulbenkiania sp. NH8B, complete genomepeptidase S24 and S26 domain containing protein7e-1475.9
NC_016002:2179969:218853921885392188967429Pseudogulbenkiania sp. NH8B, complete genomepeptidase S24 and S26 domain containing protein7e-1475.9
NC_010334:2615260:264279526427952643202408Shewanella halifaxensis HAW-EB4, complete genomepeptidase S24 and S26 domain protein1e-45181
NC_010510:534024:541392541392541844453Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, completepeptidase S24 and S26 domain protein3e-1683.6
NC_014733:1223359:123140312314031231840438Methylovorus sp. MP688 chromosome, complete genomepeptidase s24 and s26 domain protein2e-1477.4
NC_011881:1:390939094340432Arthrobacter chlorophenolicus A6 plasmid pACHL02, completepeptidase S24 and S26 domain protein8e-1165.9
NC_011894:5056901:507563950756395076154516Methylobacterium nodulans ORS 2060, complete genomepeptidase S24 and S26 domain protein2e-0651.6
NC_010334:2615260:262260426226042623011408Shewanella halifaxensis HAW-EB4, complete genomepeptidase S24 and S26 domain protein4e-47186
NC_011894:585637:622354622354622869516Methylobacterium nodulans ORS 2060, complete genomepeptidase S24 and S26 domain protein3e-1270.5
NC_011894:4013830:401775640177564018211456Methylobacterium nodulans ORS 2060, complete genomepeptidase S24 and S26 domain protein3e-1167.4
NC_011894:7109374:711828971182897118744456Methylobacterium nodulans ORS 2060, complete genomepeptidase S24 and S26 domain protein4e-0960.1
NC_012856:2633890:264250326425032643081579Ralstonia pickettii 12D chromosome 1, complete genomepeptidase S24 and S26 domain protein1e-0755.5
NC_011757:276953:292315292315292770456Methylobacterium chloromethanicum CM4, complete genomepeptidase S24 and S26 domain protein6e-1372.8
NC_010725:356609:361808361808362272465Methylobacterium populi BJ001, complete genomepeptidase S24 and S26 domain protein1e-1272
NC_009997:5188221:520999652099965210403408Shewanella baltica OS195, complete genomepeptidase S24 and S26 domain protein6e-54209
NC_011662:2320100:233366623336662334121456Thauera sp. MZ1T, complete genomepeptidase S24 and S26 domain protein2e-1477.4
NC_012969:1574330:159093015909301591391462Methylovorus glucosetrophus SIP3-4 chromosome, complete genomepeptidase S24 and S26 domain-containing protein3e-1477.4
NC_007404:1570000:157077515707751571560786Thiobacillus denitrificans ATCC 25259, complete genomepeptidase S24, LexA repressor3e-0753.5
NC_007005:1605000:161250616125061612940435Pseudomonas syringae pv. syringae B728a, complete genomePeptidase S24, S26A and S26B7e-1372.4
NC_007005:830467:840487840487840921435Pseudomonas syringae pv. syringae B728a, complete genomePeptidase S24, S26A and S26B3e-1270.5
NC_015424:2726223:276526527652652765627363Aeromonas veronii B565 chromosome, complete genomepeptidase S24-like domain-containing protein4e-1683.6
NC_015731:2460248:246163624616362462241606Nitrosomonas sp. Is79A3 chromosome, complete genomepeptidase S24/S26A/S26B3e-1270.5
NC_016901:5130147:515061851506185151025408Shewanella baltica OS678 chromosome, complete genomepeptidase S24/S26A/S26B6e-54209
NC_015566:3269469:328448832844883284913426Serratia sp. AS12 chromosome, complete genomepeptidase S24/S26A/S26B6e-1476.3
NC_015167:1154497:115575611557561156190435Cellulophaga lytica DSM 7489 chromosome, complete genomepeptidase S24/S26A/S26B2e-1271.2
NC_014842:19411:458674586746373507Pantoea sp. At-9b plasmid pPAT9B05, complete sequencepeptidase S24/S26A/S26B1e-1685.1
NC_015970:19850:238292382924263435Rhodothermus marinus SG0.5JP17-172 plasmid pRHOM17201, completepeptidase S24/S26A/S26B7e-1475.9
NC_015572:2186394:218769221876922188171480Methylomonas methanica MC09 chromosome, complete genomepeptidase S24/S26A/S26B4e-1373.6
NC_014394:2577949:258904525890452589485441Gallionella capsiferriformans ES-2 chromosome, complete genomePeptidase S24/S26A/S26B, conserved region3e-1477
NC_015703:4483500:451653045165304516979450Runella slithyformis DSM 19594 chromosome, complete genomepeptidase S24/S26A/S26B, conserved region2e-1374.7
NC_015222:2475792:249340424934042494024621Nitrosomonas sp. AL212 chromosome, complete genomepeptidase S24/S26A/S26B, conserved region4e-1167
NC_014910:1912552:191889019188901919375486Alicycliphilus denitrificans BC chromosome, complete genomepeptidase s24/s26a/s26b, conserved region protein3e-1167
NC_008255:1701195:171908717190871719515429Cytophaga hutchinsonii ATCC 33406, complete genomepeptidase, S24 family, UV repair protein5e-1579.7
NC_003902:3514000:352392035239203524399480Xanthomonas campestris pv. campestris str. ATCC 33913, completepolymerase V subunit3e-0960.5
NC_009436:2056000:206974720697472070181435Enterobacter sp. 638, complete genomeprophage repressor5e-1786.3
NC_015410:2351464:238028123802812380712432Pseudomonas mendocina NK-01 chromosome, complete genomeprotein MucA4e-1890.1
NC_014304:77715:878618786188307447Erwinia billingiae Eb661 plasmid pEB102, complete sequenceProtein SamA2e-1581.3
NC_013282:1842412:184946718494671849934468Cronobacter turicensis, complete genomeProtein umuD4e-1683.2
NC_009801:1296488:132144813214481321867420Escherichia coli E24377A, complete genomeprotein UmuD7e-1992.4
NC_015424:3520783:355284035528403553283444Aeromonas veronii B565 chromosome, complete genomeprotein UmuD6e-1785.9
NC_016830:3869572:387722238772223877647426Pseudomonas fluorescens F113 chromosome, complete genomeprotein UmuD2e-1684.3
NC_008570:1143578:116544011654401165883444Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomeprotein UmuD6e-1682.8
NC_007508:4476726:448566244856624486141480Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomeputative polymerase V subunit4e-1063.5
NC_009665:5072413:509286950928695093276408Shewanella baltica OS185 chromosome, complete genomeputative prophage repressor6e-54209
NC_008740:1357312:136883113688311369268438Marinobacter aquaeolei VT8, complete genomeputative prophage repressor3e-1580.5
NC_007963:1552761:156563415656341566074441Chromohalobacter salexigens DSM 3043, complete genomeputative prophage repressor3e-1477
NC_009052:4168776:417661141766114177018408Shewanella baltica OS155, complete genomeputative prophage repressor7e-55211
NC_008341:29038:461294612946572444Nitrosomonas eutropha C91 plasmid1, complete sequenceputative prophage repressor1e-1168.6
NC_009512:5632591:565849256584925658920429Pseudomonas putida F1, complete genomeputative prophage repressor1e-1375.5
NC_007516:1086948:110718511071851107616432Synechococcus sp. CC9605, complete genomeputative SOS mutagenesis protein UmuD1e-1582
NC_005071:671084:688212688212688706495Prochlorococcus marinus str. MIT 9313, complete genomeputative SOS mutagenesis protein UmuD3e-1993.6
NC_013716:4306695:433331543333154333674360Citrobacter rodentium ICC168, complete genomeputative SOS response protein1e-0962
NC_009453:36599:513145131451745432Arthrobacter sp. Rue61a plasmid pAL1, complete sequenceputative UmuD-like protein1e-0858.5
NC_016776:2237404:224094922409492241392444Bacteroides fragilis 638R, complete genomeputative UmuD/RumA DNA repair protein2e-1374.7
NC_003228:2245181:224994922499492250386438Bacteroides fragilis NCTC 9343, complete genomeputative UmuD/RumA DNA repair protein2e-1374.3
NC_008702:2259430:226421722642172264825609Azoarcus sp. BH72, complete genomerepressor LexA2e-0754.7
NC_020211:2123819:213673021367302137125396Serratia marcescens WW4, complete genomeSOS mutagenesis and repair protein UmuD1e-0858.5
NC_014323:3976351:398335939833593983784426Herbaspirillum seropedicae SmR1 chromosome, complete genomeSOS mutagenesis protein1e-0858.9
NC_009927:253250:254670254670255101432Acaryochloris marina MBIC11017 plasmid pREB2, complete sequenceSOS mutagenesis protein UmuD, putative2e-1580.9
NC_020064:1962172:197446219744621974884423Serratia marcescens FGI94, complete genomeSOS response transcriptional repressor, RecA-mediated autopeptidase1e-1478.6
NC_020541:1786500:180581018058101806289480Rhodanobacter sp. 2APBS1, complete genomeSOS response UmuD protein6e-1372.8
NC_016609:8251438:825282782528278253261435Niastella koreensis GR20-10 chromosome, complete genomeSOS response UmuD protein4e-1476.6
NC_015851:10915:328603286033324465Acidithiobacillus caldus SM-1 megaplasmid, complete sequenceSOS-response repressor and protease LexA7e-1062.8
NC_004459:349500:370238370238370651414Vibrio vulnificus CMCP6 chromosome I, complete sequenceSOS-response transcriptional repressor LexA -like protein6e-48189
NC_007626:2204767:224721922472192247689471Magnetospirillum magneticum AMB-1, complete genomeSOS-response transcriptional repressors1e-1581.6
NC_013730:2359939:239184123918412392086246Spirosoma linguale DSM 74, complete genomeSOS-response transcriptional repressors (RecA- mediated autopeptidase)-like protein4e-1063.2
NC_014365:2037506:204991520499152050538624Desulfarculus baarsii DSM 2075 chromosome, complete genometranscriptional repressor, LexA family1e-0651.6
NC_011146:603429:607937607937608686750Geobacter bemidjiensis Bem, complete genometranscriptional repressor, LexA family2e-0650.8
NC_009434:3611738:363139136313913631822432Pseudomonas stutzeri A1501, complete genomeultraviolet light resistance protein A8e-1785.9
NC_015740:2998500:300064130006413000970330Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completeultraviolet light resistance protein A1e-1374.7
NC_007275:1:175717572182426Pseudomonas syringae pv. phaseolicola 1448A small plasmid, completeultraviolet light resistance protein A7e-1165.9
NC_004129:5373886:542090954209095421361453Pseudomonas fluorescens Pf-5, complete genomeultraviolet light resistance protein A3e-1787
NC_016514:2476359:248828724882872488781495Enterobacter cloacae EcWSU1 chromosome, complete genomeUmuD2e-1684.7
NC_008570:2216736:225027522502752250697423Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomeumuD protein2e-1684.7
NC_012559:1497548:152788615278861528506621Laribacter hongkongensis HLHK9, complete genomeUmuD protein4e-1373.6
NC_011761:1499500:151324615132461513740495Acidithiobacillus ferrooxidans ATCC 23270 chromosome, completeumuD protein5e-1269.7
NC_008253:1228485:125123812512381251657420Escherichia coli 536, complete genomeUmuD protein7e-1992.4
NC_004431:1443968:146808314680831468502420Escherichia coli CFT073, complete genomeUmuD protein1e-1891.7
NC_004631:948054:981317981317981736420Salmonella enterica subsp. enterica serovar Typhi Ty2, completeUmuD protein1e-1685.1
NC_012108:442493:456512456512456931420Desulfobacterium autotrophicum HRM2, complete genomeUmuD18e-1475.5
NC_007941:11319:558295582956266438Escherichia coli UTI89 plasmid pUTI89, complete sequenceUV protection and mutation protein1e-1375.1
NC_016816:4129299:417061241706124171037426Pantoea ananatis LMG 5342, complete genomeUV protection protein3e-1270.5
NC_020911:1859210:188108418810841881518435Octadecabacter antarcticus 307, complete genomeUV-repair and mutation protein UmuD2e-0857.8