Pre_GI: BLASTP Hits

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Query: NC_004337:3590323:3910922 Shigella flexneri 2a str. 301, complete genome

Start: 3910922, End: 3911215, Length: 294

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. It is similar to pathogenic Escherichia coli except for the more numerous insertion sequences and contains a virulence plasmid (pCP301). Causes enteric disease. Shigella This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017328:3935185:393658139365813936874294Shigella flexneri 2002017 chromosome, complete genomeputative transport protein8e-53205
CP002185:4035502:406237340623734062666294Escherichia coli W, complete genomepredicted protein5e-52202
NC_011601:4096427:414025541402554140614360Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomehypothetical protein2e-45181
NC_013941:4470932:451397345139734514335363Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein3e-45179
NC_002655:4653160:469546346954634695825363Escherichia coli O157:H7 EDL933, complete genomehypothetical protein3e-45179
NC_002695:4584177:462648046264804626842363Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein3e-45179
NC_013008:4643825:468569446856944685987294Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein6e-45179
NC_011353:4688000:472965347296534729946294Escherichia coli O157:H7 str. EC4115 chromosome, complete genomehypothetical protein6e-45179
NC_010498:4072681:409656040965604096853294Escherichia coli SMS-3-5, complete genomehypothetical protein2e-44177
NC_011751:4293966:430071843007184301080363Escherichia coli UMN026 chromosome, complete genomehypothetical protein2e-44177
NC_011750:4390000:441893744189374419299363Escherichia coli IAI39 chromosome, complete genomehypothetical protein1e-44177
NC_011149:3895921:390005639000563900349294Salmonella enterica subsp. enterica serovar Agona str. SL483,hypothetical protein2e-37154
NC_003197:3971905:397554439755443975837294Salmonella typhimurium LT2, complete genomeputative inner membrane protein7e-37152
NC_004631:3841975:385844838584483858741294Salmonella enterica subsp. enterica serovar Typhi Ty2, completeputative secreted protein7e-37152
NC_011083:3985618:398975339897533990046294Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,hypothetical protein7e-37152
NC_003198:3855157:387295838729583873251294Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative secreted protein7e-37152
NC_016810:3993863:399685839968583997151294Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein7e-37152
NC_016856:3985597:398923639892363989529294Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative inner membrane protein7e-37152
NC_016857:3993864:399685939968593997152294Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74hypothetical protein7e-37152
NC_016860:3995445:399844039984403998733294Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein7e-37152
NC_016863:3933848:393684339368433937136294Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative inner membrane protein7e-37152
NC_017046:3991551:399568639956863995979294Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein7e-37152
NC_009792:4693152:471558247155824715944363Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein4e-34143
NC_011094:3853036:385603138560313856324294Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein4e-33139
NC_012125:3905782:390877739087773909070294Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein2e-32137
NC_011147:3755725:375936437593643759657294Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein2e-32137
NC_006511:3759550:376368537636853763978294Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative secreted protein2e-32137
NC_006905:3913988:391398839139883914281294Salmonella enterica subsp. enterica serovar Choleraesuis strputative inner membrane protein2e-32137
NC_011080:3941909:394490439449043945197294Salmonella enterica subsp. enterica serovar Newport str. SL254,hypothetical protein2e-32137
NC_010102:3919999:392363839236383923931294Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein2e-32137