Pre_GI: BLASTP Hits

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Query: NC_004337:2098736:2113026 Shigella flexneri 2a str. 301, complete genome

Start: 2113026, End: 2113916, Length: 891

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. It is similar to pathogenic Escherichia coli except for the more numerous insertion sequences and contains a virulence plasmid (pCP301). Causes enteric disease. Shigella This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017328:2153083:216732721673272168217891Shigella flexneri 2002017 chromosome, complete genomedTDP-rhamnosyl transferase rfbF1e-172605
NC_004741:2081649:209589320958932096783891Shigella flexneri 2a str. 2457T, complete genomedTDP-rhamnosyl transferase1e-172605
NC_008258:2100646:211489121148912115652762Shigella flexneri 5 str. 8401, complete genomedTDP-rhamnosyl transferase6e-147520
NC_014207:1366766:137902513790251379933909Methylotenera sp. 301 chromosome, complete genomerhamnosyltransferase1e-36153
NC_018868:569423:579542579542580405864Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomerhamnosyltransferase3e-33142
NC_010682:661272:669138669138670064927Ralstonia pickettii 12J chromosome 1, complete sequencerhamnosyltransferase3e-32139
NC_014562:2049921:205788920578892058638750Pantoea vagans C9-1 chromosome, complete genomedTDP-rhamnosyl transferase5e-31135
NC_010468:1775000:179109217910921791979888Escherichia coli ATCC 8739, complete genomeglycosyl transferase family 26e-31134
NC_010995:4117963:413709041370904137989900Cellvibrio japonicus Ueda107, complete genomeglycosyl transferase, putative, gt2D3e-30132
NC_015376:903939:905671905671906609939Burkholderia gladioli BSR3 chromosome chromosome 2, completeRhamnosyltransferase5e-30131
NC_008553:1038344:104944910494491050342894Methanosaeta thermophila PT, complete genomeglycosyl transferase, family 26e-30131
NC_010508:933862:938441938441939340900Burkholderia cenocepacia MC0-3 chromosome 1, complete sequencerhamnosyltransferase6e-30131
NC_012968:1108687:112544511254451126395951Methylotenera mobilis JLW8, complete genomerhamnosyltransferase2e-29130
NC_010622:2576110:259994125999412600852912Burkholderia phymatum STM815 chromosome 1, complete sequencerhamnosyltransferase3e-29129
NC_007606:1999870:201345420134542014365912Shigella dysenteriae Sd197, complete genomerhamnosyl transferase I5e-29128
NC_009483:3544333:355464535546453555556912Geobacter uraniireducens Rf4 chromosome, complete genomeglycosyltransferase-like protein1e-28126
NC_010125:3467379:348094034809403481905966Gluconacetobacter diazotrophicus PAl 5, complete genomeputative glycosyl transferase2e-28126
NC_015731:447411:452489452489453412924Nitrosomonas sp. Is79A3 chromosome, complete genomerhamnosyltransferase4e-28125
NC_012691:3126500:313622231362223137103882Tolumonas auensis DSM 9187, complete genomeglycosyl transferase family 28e-28124
NC_015556:4074367:408273840827384083694957Pseudomonas fulva 12-X chromosome, complete genomeglycosyl transferase family 21e-27124
NC_012691:3126500:313712831371283137997870Tolumonas auensis DSM 9187, complete genomerhamnosyltransferase1e-26120
NC_008228:3841897:384786338478633848729867Pseudoalteromonas atlantica T6c, complete genomerhamnosyltransferase2e-26119
NC_020210:3341976:340168834016883402599912Geobacillus sp. GHH01, complete genomedTDP-rhamnosyl transferase5e-26118
NC_020541:625925:646324646324647262939Rhodanobacter sp. 2APBS1, complete genomeputative glycosyltransferase7e-26117
NC_014306:3210311:324994332499433250839897Erwinia billingiae Eb661, complete genomeRhamnosyltransferase7e-26117
NC_004342:1648977:166515416651541666065912Leptospira interrogans serovar Lai str. 56601 chromosome I,dTDP-rhamnosyl transferase rfbF1e-25117
NC_014500:1491660:151009615100961511010915Dickeya dadantii 3937 chromosome, complete genomedTDP-rhamnosyl transferase rfbF2e-25116
NC_011026:2450325:246779324677932468668876Chloroherpeton thalassium ATCC 35110, complete genomeglycosyl transferase family 27e-24111
NC_020541:1014176:102126210212621022212951Rhodanobacter sp. 2APBS1, complete genomeputative glycosyltransferase8e-23107
NC_013199:2058857:207328120732812074099819Lactobacillus rhamnosus Lc 705, complete genomeglycosyltransferase (WelH)8e-2097.8
NC_021066:460292:479609479609480475867Raoultella ornithinolytica B6, complete genomedtdp-rhamnosyl transferase rfbf protein3e-1995.9
NC_013730:5989387:600466460046646005533870Spirosoma linguale DSM 74, complete genomeglycosyl transferase, group 2 family protein8e-1994.4
NC_010610:107500:117881117881118753873Lactobacillus fermentum IFO 3956, complete genomeputative glycosyltransferases1e-1894
NC_015385:1406419:142693714269371427650714Treponema succinifaciens DSM 2489 chromosome, complete genomeglycosyl transferase family protein2e-1893.6
NC_014311:2781898:279243427924342793366933Ralstonia solanacearum PSI07 chromosome, complete genomedtdp-rhamnosyl transferase rfbf protein3e-1892.8
NC_012815:1603916:164266216426621643498837Bifidobacterium animalis subsp. lactis DSM 10140, complete genomeglycosyl transferase family protein7e-1891.3
NC_012814:1599241:164294416429441643780837Bifidobacterium animalis subsp. lactis Bl-04, complete genomeglycosyl transferase family protein7e-1891.3
NC_017214:299637:340173340173341009837Bifidobacterium animalis subsp. lactis BB-12 chromosome, completeRfbF7e-1891.3
NC_017215:1605917:164757816475781648414837Bifidobacterium animalis subsp. lactis CNCM I-2494 chromosome,Hexosyltransferase7e-1891.3
NC_017216:1603000:164259016425901643426837Bifidobacterium animalis subsp. lactis BLC1, complete genomeglycosyltransferase, group 2 family protein7e-1891.3
NC_017217:1607679:164823116482311649067837Bifidobacterium animalis subsp. lactis V9 chromosome, completeglycosyl transferase family protein7e-1891.3
NC_012814:1599241:163042616304261631289864Bifidobacterium animalis subsp. lactis Bl-04, complete genomeglycosyl transferase, group 2 family protein2e-1686.7
NC_012815:1603916:163014416301441631007864Bifidobacterium animalis subsp. lactis DSM 10140, complete genomeglycosyl transferase, group 2 family protein2e-1686.7
NC_017214:299637:327666327666328529864Bifidobacterium animalis subsp. lactis BB-12 chromosome, completeRfbF2e-1686.7
NC_017215:1605917:163506016350601635923864Bifidobacterium animalis subsp. lactis CNCM I-2494 chromosome,hypothetical protein2e-1686.7
NC_017216:1603000:163007116300711630934864Bifidobacterium animalis subsp. lactis BLC1, complete genomeglycosyl transferase, group 2 family protein2e-1686.7
NC_017217:1607679:163571316357131636576864Bifidobacterium animalis subsp. lactis V9 chromosome, completeglycosyl transferase family protein2e-1686.7
NC_007606:1999870:201258120125812013429849Shigella dysenteriae Sd197, complete genomerhamnosyl transferase II5e-1685.5
NC_013665:1922000:193484619348461935745900Methanocella paludicola SANAE, complete genomeputative glycosyltransferase1e-1480.9
NC_008609:2254392:226353422635342264442909Pelobacter propionicus DSM 2379, complete genomeglycosyl transferase, family 23e-1479.3
NC_013158:2170083:218302321830232183958936Halorhabdus utahensis DSM 12940, complete genomeglycosyl transferase family 24e-1479
NC_009523:5298488:529982552998255300727903Roseiflexus sp. RS-1 chromosome, complete genomeglycosyl transferase family protein3e-1376.3
NC_013967:1878045:189585218958521896775924Haloferax volcanii DS2 chromosome, complete genomerhamnosyl transferase homolog4e-1375.5
NC_011886:2696671:270983827098382710767930Arthrobacter chlorophenolicus A6, complete genomeglycosyl transferase family 29e-1374.3
NC_010658:1090104:110671711067171107664948Shigella boydii CDC 3083-94, complete genomeWbwY4e-1272.4
NC_008609:3011059:301788030178803018824945Pelobacter propionicus DSM 2379, complete genomeglycosyl transferase, family 26e-1168.2
NC_014974:246404:253404253404254312909Thermus scotoductus SA-01 chromosome, complete genomerhamnosyl transferase3e-1066.2
NC_012815:1603916:162252616225261623419894Bifidobacterium animalis subsp. lactis DSM 10140, complete genomeglycosyltransferase3e-1065.9
NC_012814:1599241:162280816228081623701894Bifidobacterium animalis subsp. lactis Bl-04, complete genomeglycosyltransferase3e-1065.9
NC_011835:733320:753736753736754629894Bifidobacterium animalis subsp. lactis AD011 chromosome, completeEpsQ protein3e-1065.9
NC_017214:299637:320048320048320941894Bifidobacterium animalis subsp. lactis BB-12 chromosome, completeRfbF3e-1065.9
NC_017215:1605917:162744216274421628335894Bifidobacterium animalis subsp. lactis CNCM I-2494 chromosome,Hexosyltransferase3e-1065.9
NC_017216:1603000:162245316224531623346894Bifidobacterium animalis subsp. lactis BLC1, complete genomeglycosyl transferase, family 23e-1065.9
NC_017217:1607679:162809516280951628988894Bifidobacterium animalis subsp. lactis V9 chromosome, completeglycosyltransferase3e-1065.9
NC_012815:1603916:164171616417161642669954Bifidobacterium animalis subsp. lactis DSM 10140, complete genomeputative glycosyltransferase2e-0963.5
NC_012814:1599241:164199816419981642951954Bifidobacterium animalis subsp. lactis Bl-04, complete genomeputative glycosyltransferase2e-0963.5
NC_017214:299637:339227339227340180954Bifidobacterium animalis subsp. lactis BB-12 chromosome, completeRfbF2e-0963.5
NC_017215:1605917:164663216466321647585954Bifidobacterium animalis subsp. lactis CNCM I-2494 chromosome,Hexosyltransferase2e-0963.5
NC_017216:1603000:164164416416441642597954Bifidobacterium animalis subsp. lactis BLC1, complete genomeglycosyltransferase, group 2 family protein2e-0963.5
NC_017217:1607679:164728516472851648238954Bifidobacterium animalis subsp. lactis V9 chromosome, completeputative glycosyltransferase2e-0963.5
NC_012984:1074721:108683010868301087747918Lactobacillus plantarum JDM1, complete genomeglycosyltransferase2e-0963.2
NC_016051:1429800:1443740144374014447951056Thermococcus sp. AM4 chromosome, complete genomeglycosyltransferase4e-0962
NC_015186:2063960:207294720729472073825879Acidiphilium multivorum AIU301, complete genomeputative glycosyltransferase7e-0961.6
NC_015757:1329012:133922013392201340053834Sulfobacillus acidophilus TPY chromosome, complete genomeglycosyltransferase, group 1 family protein1e-0860.8
NC_016884:2194419:221097222109722211805834Sulfobacillus acidophilus DSM 10332 chromosome, complete genomefamily 2 glycosyl transferase1e-0860.8
NC_012913:626449:640794640794641717924Aggregatibacter aphrophilus NJ8700, complete genomeglycosyl transferase, family 29e-0960.8
NC_015660:296488:321132321132322001870Geobacillus thermoglucosidasius C56-YS93 chromosome, completefamily 2 glycosyl transferase1e-0860.5
NC_013665:231023:239170239170240123954Methanocella paludicola SANAE, complete genomeputative glycosyltransferase1e-0860.5
NC_009436:2836847:284839428483942849308915Enterobacter sp. 638, complete genomeglycosyl transferase family protein2e-0859.7
NC_012781:2802000:2816370281637028176831314Eubacterium rectale ATCC 33656, complete genomeGlycosyltransferase Family 2-like b-glycosyltransferase4e-0858.9
NC_001264:28266:426324263243447816Deinococcus radiodurans R1 chromosome 2, complete sequencerhamnosyltransferase, putative8e-0858.2
NC_011060:244949:249633249633250472840Pelodictyon phaeoclathratiforme BU-1, complete genomeglycosyl transferase family 21e-0757.8
NC_009483:3727490:375666637566663757559894Geobacter uraniireducens Rf4 chromosome, complete genomeglycosyl transferase family protein1e-0757.8
NC_007512:1539095:154635215463521547326975Pelodictyon luteolum DSM 273, complete genomeglycosyl transferase, group 2 family1e-0757
NC_017187:1683619:169961416996141700498885Arcobacter butzleri ED-1, complete genomeputative glycosyltransferase2e-0756.6
NC_014935:1389000:141567414156741416669996Nitratifractor saLSUginis DSM 16511 chromosome, complete genomeglycosyl transferase family 22e-0756.6
NC_015596:1556007:1577002157700215780211020Sinorhizobium meliloti AK83 chromosome 2, complete sequencefamily 2 glycosyl transferase6e-0755.1
NC_011978:15059:245972459725520924Thermotoga neapolitana DSM 4359, complete genomeGlycosyl transferase, family 21e-0654.3
NC_009615:322107:337475337475338380906Parabacteroides distasonis ATCC 8503 chromosome, complete genomeglycosyl transferase family protein1e-0653.9
NC_003901:775500:7815557815557825831029Methanosarcina mazei Go1, complete genomeglycosyltransferase2e-0653.5
NC_009052:3381943:339592733959273396844918Shewanella baltica OS155, complete genomeglycosyl transferase, family 22e-0653.5
NC_010482:841609:850484850484851323840Candidatus Korarchaeum cryptofilum OPF8, complete genomeglycosyl transferase family 22e-0653.1
NC_011083:824659:833578833578834471894Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,putative glycosyl transferase4e-0652.4
NC_015680:1562535:159256715925671593538972Pyrococcus yayanosii CH1 chromosome, complete genomeglycosyltransferase4e-0652.4
NC_000961:372000:3860873860873871331047Pyrococcus horikoshii OT3, complete genomehypothetical protein5e-0652
NC_014212:2776457:278823427882342789127894Meiothermus silvanus DSM 9946 chromosome, complete genomeglycosyl transferase family 25e-0652
NC_003197:776238:785165785165786061897Salmonella typhimurium LT2, complete genomeputative glycosyl transferase1e-0551.2
NC_016810:775649:784576784576785472897Salmonella enterica subsp. enterica serovar Typhimurium strputative glycosyl transferase1e-0551.2
NC_016856:776735:785662785662786558897Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative glycosyl transferase1e-0551.2
NC_016857:775649:784576784576785472897Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative glycosyl transferase1e-0551.2
NC_016863:776734:785661785661786557897Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative glycosyl transferase1e-0551.2
NC_011978:15059:209972099721797801Thermotoga neapolitana DSM 4359, complete genomehypothetical protein8e-0651.2
NC_014758:1207894:1235504123550412365231020Calditerrivibrio nitroreducens DSM 19672 chromosome, completeglycosyl transferase family 28e-0651.2
NC_009617:5545477:554828055482805549149870Clostridium beijerinckii NCIMB 8052 chromosome, complete genomeglycosyl transferase family protein8e-0651.2
NC_016860:816000:823998823998824891894Salmonella enterica subsp. enterica serovar Typhimurium strputative glycosyl transferase1e-0550.8