Pre_GI Gene

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Host: NC_008228 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_008228:3841897 Pseudoalteromonas atlantica T6c, complete genome

Host Lineage: Pseudoalteromonas atlantica; Pseudoalteromonas; Pseudoalteromonadaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: Isolated from a biofilm from San Diego Bay in California. Marine biofilm bacterium associated with shell disease in shellfish. A common marine bacterium that exists both in the water column, and in biofilms attached to surfaces. This organism produces a well characterized, commercially important agarase. Pseudoalteromonas atlantica has been isolated from lesions on crabs with shell disease. Shell disease is characterized by progressive degradation of the shell, often leading to an infection of the hemolymph (blood) and may be caused by Pseudoalteromonas, Alteromonas, Vibrio, or other marine organisms. In addition to producing extracellular enzymes which attack the shell, Pseudoalteromonas atlantica produces a the lipopolysaccharide which has been shown to be a potential virulence factor in shell disease.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
384189738432371341UDP-glucose 6-dehydrogenaseQuickGO ontologyBLASTP
38436683844024357hypothetical protein
38441123844786675hypothetical proteinBLASTP
38448053845548744protein of unknown function DUF1017QuickGO ontologyBLASTP
384554538476742130protein of unknown function DUF940 membrane lipoprotein putativeQuickGO ontologyBLASTP
38478633848729867rhamnosyltransferaseQuickGO ontologyBLASTP
38487263849502777glycosyltransferaseQuickGO ontologyBLASTP
384983938515691731glycosyl transferase family 2QuickGO ontologyBLASTP
385163938527361098hypothetical proteinBLASTP
385292838540971170hypothetical proteinBLASTP
385419238552771086hypothetical proteinBLASTP
38552883855686399cytidyltransferase-related domainQuickGO ontologyBLASTP
385570238569791278coagulation factor 58 type-likeQuickGO ontologyBLASTP
385700738589621956hypothetical protein
385910838601571050hypothetical protein