Pre_GI: BLASTP Hits

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Query: NC_004337:1783645:1793312 Shigella flexneri 2a str. 301, complete genome

Start: 1793312, End: 1793797, Length: 486

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. It is similar to pathogenic Escherichia coli except for the more numerous insertion sequences and contains a virulence plasmid (pCP301). Causes enteric disease. Shigella This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008258:1784637:179264217926421793121480Shigella flexneri 5 str. 8401, complete genomehypothetical protein3e-67253
NC_016822:1818897:1826129182612918272921164Shigella sonnei 53G, complete genomehypothetical protein1e-65248
NC_007384:1737885:1746807174680717479701164Shigella sonnei Ss046, complete genomehypothetical protein1e-65248
NC_002655:2015000:202229120222912022794504Escherichia coli O157:H7 EDL933, complete genomehypothetical protein2e-62237
NC_002695:2056545:206567920656792066182504Escherichia coli O157:H7 str. Sakai, complete genomeIpaH-like protein2e-62237
NC_011353:1971145:198027919802791980782504Escherichia coli O157:H7 str. EC4115 chromosome, complete genome2e-62237
NC_013941:1857724:187014318701431870646504Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein4e-61233
NC_011750:1809943:1820681182068118219461266Escherichia coli IAI39 chromosome, complete genomehypothetical protein2e-60231
NC_010498:1700447:1707032170703217082911260Escherichia coli SMS-3-5, complete genomehypothetical protein2e-59228
NC_007606:1515403:1526379152637915274011023Shigella dysenteriae Sd197, complete genomehypothetical protein4e-23107