Pre_GI: BLASTP Hits

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Query: NC_004129:4368356:4371474 Pseudomonas fluorescens Pf-5, complete genome

Start: 4371474, End: 4371788, Length: 315

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011770:860944:881354881354881686333Pseudomonas aeruginosa LESB58, complete genomeHolin, phage lambda2e-2097.8
NC_011294:1220526:123559112355911235935345Salmonella enterica subsp. enterica serovar Enteritidis strbacteriophage holin3e-1270.5
NC_016831:1734292:174181317418131742148336Salmonella enterica subsp. enterica serovar Gallinarum/pullorumputative bacteriophage holin4e-1270.1
NC_011205:1345511:137147013714701371805336Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853phage holin, lambda family4e-1270.1
NC_014228:3022903:304192930419293042252324Xenorhabdus nematophila ATCC 19061, complete genomeholin9e-1268.9
NC_009655:1357486:137879113787911379180390Actinobacillus succinogenes 130Z chromosome, complete genomephage holin2e-1167.4
NC_004578:3849835:385318938531893853512324Pseudomonas syringae pv. tomato str. DC3000, complete genomeholin6e-1166.2
NC_005773:2177184:219141121914112191725315Pseudomonas syringae pv. phaseolicola 1448A, complete genomeprophage PSPPH02, holin, lambda family7e-1165.9
NC_012962:4942000:495068649506864951009324Photorhabdus asymbiotica, complete genomesimilar to bacteriophage protein8e-1165.9
NC_013892:671000:690883690883691197315Xenorhabdus bovienii SS-2004 chromosome, complete genomehypothetical protein9e-1165.5
NC_013892:2005480:200849920084992008813315Xenorhabdus bovienii SS-2004 chromosome, complete genomehypothetical protein9e-1165.5
NC_015968:3301958:330616233061623306503342Enterobacter asburiae LF7a chromosome, complete genomephage holin, lambda family1e-0962
NC_012779:2184927:219484621948462195193348Edwardsiella ictaluri 93-146, complete genomephage holin, lambda family, putative2e-0961.2
NC_012751:899394:905288905288905626339Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), completeputative phage holin5e-0856.2
NC_011094:638552:664203664203664547345Salmonella enterica subsp. enterica serovar Schwarzengrund strphage holin, lambda family protein2e-0754.7
NC_012779:1939747:194568519456851945984300Edwardsiella ictaluri 93-146, complete genomephage holin, lambda family, putative2e-0754.3
NC_017046:2756000:275693027569302757178249Salmonella enterica subsp. enterica serovar Typhimurium str. 798Gifsy-2 bacteriophage holin1e-0651.6
NC_006905:368942:391363391363391686324Salmonella enterica subsp. enterica serovar Choleraesuis strholin-like protein5e-0650.1
NC_009800:289000:309172309172309495324Escherichia coli HS, complete genomephage holin, lambda family5e-0650.1
NC_012125:1330066:135264413526441352961318Salmonella enterica subsp. enterica serovar Paratyphi C strainholin-like protein5e-0650.1
NC_017328:303987:325292325292325615324Shigella flexneri 2002017 chromosome, complete genomeS protein5e-0650.1
NC_012947:3015985:301690330169033017226324Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completephage holin, lambda family5e-0650.1
NC_011283:2836000:289803028980302898353324Klebsiella pneumoniae 342 chromosome, complete genomephage holin, lambda family1e-0548.9
NC_013961:3413011:342446934244693424867399Erwinia amylovora, complete genomeHolin (Lysis protein 13)1e-0548.9
NC_013971:335247:346521346521346913393Erwinia amylovora ATCC 49946 chromosome, complete genomephage holin1e-0548.9