Pre_GI: BLASTP Hits

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Query: NC_004129:3123000:3125141 Pseudomonas fluorescens Pf-5, complete genome

Start: 3125141, End: 3125728, Length: 588

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012660:3689223:369128836912883691878591Pseudomonas fluorescens SBW25 chromosome, complete genomeTetR family transcriptional regulator9e-75279
NC_013592:1602242:160886316088631609432570Dickeya dadantii Ech586, complete genometranscriptional regulator, TetR family4e-59227
NC_011663:2568190:258893725889372589494558Shewanella baltica OS223 chromosome, complete genomeTetR family transcriptional regulator1e-58226
NC_014258:127500:128454128454129002549Pantoea vagans C9-1 plasmid pPag3, complete sequenceHTH-type transcriptional regulator1e-52206
NC_009832:3500000:350540635054063505966561Serratia proteamaculans 568, complete genometranscriptional regulator, TetR family5e-52203
NC_015953:46732:631566315663755600Streptomyces sp. SirexAA-E chromosome, complete genomeTetR family transcriptional regulator6e-30130
NC_011983:1746000:174603617460361746614579Agrobacterium radiobacter K84 chromosome 2, complete genometranscriptional regulator protein2e-27121
NC_012988:4633930:466020846602084660750543Methylobacterium extorquens DM4, complete genomeTetR family transcriptional regulator5e-26117
NC_010172:4185904:421382142138214214363543Methylobacterium extorquens PA1, complete genomeregulatory protein TetR9e-26116
NC_014217:800406:805701805701806249549Starkeya novella DSM 506 chromosome, complete genometranscriptional regulator, TetR family4e-24111
NC_010338:588000:588037588037588642606Caulobacter sp. K31, complete genometranscriptional regulator, TetR family4e-23107
NC_013595:6978614:698322669832266983801576Streptosporangium roseum DSM 43021, complete genomeputative transcriptional regulator, TetR family7e-23107
NC_016582:1639375:167531116753111675883573Streptomyces bingchenggensis BCW-1 chromosome, complete genomeputative TetR family regulator2e-22105
NC_018750:6237875:625588762558876256447561Streptomyces venezuelae ATCC 10712, complete genomeTranscriptional regulator, TetR family9e-22103
NC_008782:2568027:259582925958292596410582Acidovorax sp. JS42, complete genometranscriptional regulator, TetR family6e-22103
NC_013929:8474195:850754385075438508133591Streptomyces scabiei 87.22 chromosome, complete genomeTetR family transcriptional regulator2e-21102
NC_013929:4807910:481708548170854817657573Streptomyces scabiei 87.22 chromosome, complete genomeTetR family transcriptional regulator4e-21101
NC_014539:743523:770361770361770942582Burkholderia sp. CCGE1003 chromosome 1, complete sequenceregulatory protein TetR8e-21100
NC_012968:1191037:120521612052161205824609Methylotenera mobilis JLW8, complete genometranscriptional regulator, TetR family8e-2096.7
NC_002944:1881405:188140518814051882076672Mycobacterium avium subsp. paratuberculosis K-10, complete genomehypothetical protein2e-1995.5
NC_007005:830467:845008845008845643636Pseudomonas syringae pv. syringae B728a, complete genomeregulatory protein, TetR3e-1994.7
NC_012969:1442147:145618814561881456784597Methylovorus glucosetrophus SIP3-4 chromosome, complete genomeTetR family transcriptional regulator8e-1890.1
NC_004129:4993974:499953349995335000093561Pseudomonas fluorescens Pf-5, complete genometranscriptional regulator, TetR family7e-1787
NC_008314:1275617:129317512931751293768594Ralstonia eutropha H16 chromosome 2, complete sequencetranscriptional regulator8e-1787
NC_018868:2935580:295135029513502951889540Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genometranscriptional regulator8e-1786.7
NC_015723:384000:389388389388389915528Cupriavidus necator N-1 chromosome 2, complete sequenceTetR family transcriptional regulator3e-1685.1
NC_015856:4301230:431541643154164316036621Collimonas fungivorans Ter331 chromosome, complete genomeTetR family transcriptional regulator3e-1685.1
NC_012560:5276000:528147152814715282031561Azotobacter vinelandii DJ, complete genomeTranscriptional regulatory protein, TetR family4e-1684.7
NC_021150:5234000:523936352393635239923561Azotobacter vinelandii CA6, complete genomeTranscriptional regulatory protein, TetR family4e-1684.7
NC_014306:642152:655932655932656531600Erwinia billingiae Eb661, complete genomeTranscriptional regulator, TetR family1e-1583.2
NC_013592:3212834:322058632205863221164579Dickeya dadantii Ech586, complete genometranscriptional regulator, TetR family2e-1582.4
NC_016582:9459566:947325194732519473763513Streptomyces bingchenggensis BCW-1 chromosome, complete genomeputative transcriptional regulator, TetR family protein3e-1581.6
NC_014837:3739408:374879137487913749378588Pantoea sp. At-9b chromosome, complete genomeTetR family transcriptional regulator3e-1581.6
NC_014310:1086183:109337610933761093957582Ralstonia solanacearum PSI07 megaplasmid, complete sequencetranscriptional regulator, tetr family4e-1581.3
NC_007492:4563981:456398145639814564538558Pseudomonas fluorescens PfO-1, complete genomeTranscriptional Regulator, TetR family3e-1478.6
NC_008712:215499:221110221110221676567Arthrobacter aurescens TC1 plasmid TC1, complete sequenceputative Transcriptional regulator, TetR family2e-1375.9
NC_012660:1804610:183376918337691834347579Pseudomonas fluorescens SBW25 chromosome, complete genomeputative TetR family regulatory protein1e-1273.2
NC_009656:1994392:203873320387332039275543Pseudomonas aeruginosa PA7 chromosome, complete genomeputative transcriptional regulator6e-1063.9
NC_016935:4038265:405841140584114059013603Paenibacillus mucilaginosus 3016 chromosome, complete genometranscriptional regulator1e-0962.8
NC_015690:3477573:349850234985023499104603Paenibacillus mucilaginosus KNP414 chromosome, complete genometranscriptional regulator1e-0962.8
NC_016830:1182765:119124511912451191841597Pseudomonas fluorescens F113 chromosome, complete genomeTetR family transcriptional regulator7e-0960.5
NC_007645:5724000:574193757419375742581645Hahella chejuensis KCTC 2396, complete genomeTranscriptional regulator6e-0960.5
NC_007963:3225306:324092132409213241568648Chromohalobacter salexigens DSM 3043, complete genometranscriptional regulator, TetR family3e-0858.5
NC_015566:1127595:116103711610371161717681Serratia sp. AS12 chromosome, complete genomeTetR family transcriptional regulator7e-0857
NC_015567:1127780:116122211612221161902681Serratia sp. AS9 chromosome, complete genomeTetR family transcriptional regulator7e-0857
NC_014310:1086183:109266710926671093143477Ralstonia solanacearum PSI07 megaplasmid, complete sequencetranscriptional regulator, tetr family1e-0756.2
NC_010002:4256651:428231342823134282894582Delftia acidovorans SPH-1, complete genometranscriptional regulator, TetR family9e-0753.5
NC_008268:3162824:3181094318109431822901197Rhodococcus sp. RHA1, complete genomeprobable transcriptional regulator1e-0652.8
NC_009921:5275694:529638452963845297010627Frankia sp. EAN1pec, complete genometranscriptional regulator, TetR family3e-0652
NC_009512:2108686:213674621367462137351606Pseudomonas putida F1, complete genometranscriptional regulator, TetR family3e-0652
NC_017986:4790482:483635748363574836962606Pseudomonas putida ND6 chromosome, complete genomeTetR family transcriptional regulator3e-0652
NC_016111:6222461:6231155623115562325131359Streptomyces cattleya NRRL 8057, complete genomeKsbA7e-0650.4
NC_015690:3477573:348976134897613490366606Paenibacillus mucilaginosus KNP414 chromosome, complete genomeTetR family transcriptional regulator8e-0650.4
NC_016935:4038265:404800040480004048605606Paenibacillus mucilaginosus 3016 chromosome, complete genomeTetR family transcriptional regulator9e-0650.1
NC_020418:3102460:310548531054853106096612Morganella morganii subsp. morganii KT, complete genomeTranscriptional regulator, TetR family9e-0650.1