Pre_GI: BLASTP Hits

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Query: NC_003063:1019674:1027200 Agrobacterium tumefaciens str. C58 chromosome linear, complete

Start: 1027200, End: 1027457, Length: 258

Host Lineage: Agrobacterium fabrum; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain is a biovar 1 nopaline-producing strain originally isolated from a cherry tree tumor. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003304:51048:622356223562492258Agrobacterium tumefaciens str. C58 chromosome circular, completehypothetical protein6e-44175
NC_003063:757999:764765764765765064300Agrobacterium tumefaciens str. C58 chromosome linear, completehypothetical protein6e-43172
NC_003305:1297785:130969213096921309991300Agrobacterium tumefaciens str. C58 chromosome linear, completehypothetical protein6e-43172
NC_003304:2507000:251278825127882512997210Agrobacterium tumefaciens str. C58 chromosome circular, completehypothetical protein5e-34142
NC_003305:1035342:104736510473651047556192Agrobacterium tumefaciens str. C58 chromosome linear, completehypothetical protein4e-30130
NC_010169:1599936:1605844160584416089543111Brucella suis ATCC 23445 chromosome I, complete sequence23S rRNA,segment 15e-1063.2
NC_008380:58232:6654966549692092661Rhizobium leguminosarum bv. viciae 3841, complete genome23S ribosomal RNA1e-0962
NC_008380:4078670:4085774408577440884342661Rhizobium leguminosarum bv. viciae 3841, complete genome23S ribosomal RNA1e-0962
NC_008380:4532969:4540854454085445435142661Rhizobium leguminosarum bv. viciae 3841, complete genome23S ribosomal RNA1e-0962
NC_008254:3246306:3252128325212832550022875Mesorhizobium sp. BNC1, complete genome23S ribosomal RNA3e-0857.4
NC_008254:2728693:2734616273461627374902875Mesorhizobium sp. BNC1, complete genome23S ribosomal RNA3e-0857.4
NC_006142:243899:2562262562262589872762Rickettsia typhi str. Wilmington, complete genome23S ribosomal RNA5e-0856.6
NC_006142:243899:258881258881259212332Rickettsia typhi str. Wilmington, complete genome1e-0755.1