Pre_GI: BLASTN Hits

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Query: NC_011333:1236730 Helicobacter pylori G27 chromosome, complete genome

Start: 1236730, End: 1264929, Length: 28200

Host Lineage: Helicobacter pylori; Helicobacter; Helicobacteraceae; Campylobacterales; Proteobacteria; Bacteria

General Information: Helicobacter pylori is a gram-negative pathogen that colonizes the stomachs of over half the world's population. Originally isolated from an endoscopy patient from Grosseto Hospital (Tuscany, Italy). Causes peptic ulcers. This genus consists of organisms that colonize the mucosal layer of the gastrointestinal tract or are found enterohepatically (in the liver). It was only recently discovered (1983) by two Australians (Warren and Marshall) that this organism was associated with peptic ulcers. It is one of the most common chronic infectious organisms, and is found in half the world's population. This organism attacks the gastric epithilial surface, resulting in chronic gastritis, and can cause more severe diseases including those that lead to gastric carcinomas and lymphomas, peptic ulcers, and severe diarrhea. It is an extracellular pathogen that persists in the gastric environment, which has a very low pH, by production of the urease enzyme, which converts urea to ammonia and carbon dioxide, a process which can counteract the acidic environment by production of a base. The toxins include cytolethal distending toxin, vacuolating cytotoxin (VacA) that induces host epithelial cell apopoptosis (cell death), and the cytotoxin associated antigen (CagA) which results in alteration to the host cell signalling pathways. The CagA protein is translocated into host cells by a type IV secretion system encoded by the cag pathogenicity island.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_004917:340997*34099735926818272Helicobacter hepaticus ATCC 51449, complete genome3e-133484BLASTN svgBLASTP svg
NC_014802:441000*44100045999318994Campylobacter jejuni subsp. jejuni ICDCCJ07001 chromosome, complete9e-47196BLASTN svgBLASTP svg
NC_008787:437786*43778645759919814Campylobacter jejuni subsp. jejuni 81-176, complete genome9e-47196BLASTN svgBLASTP svg
NC_012039:412837*41283745648543649Campylobacter lari RM2100, complete genome3e-31145BLASTN svgBLASTP svg
NC_003912:472000*47200049506923070Campylobacter jejuni RM1221, complete genome2e-26129BLASTN svgBLASTP svg
NC_008599:1291300*1291300131526123962Campylobacter fetus subsp. fetus 82-40, complete genome2e-20109BLASTN svgBLASTP svg
NC_009802:647901*64790167009922199Campylobacter concisus 13826, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_018644:910000*91000093169821699Alpha proteobacterium HIMB59 chromosome, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_008593:196257*19625723516638910Clostridium novyi NT, complete genome4e-1591.7BLASTN svgBLASTP svg
NC_006570:324974*32497435814633173Francisella tularensis subsp. tularensis Schu 4, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_007354:233991*23399125671722727Ehrlichia canis str. Jake, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_007880:221674*22167425368932016Francisella tularensis subsp. holarctica, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_008245:324926*32492635809933174Francisella tularensis subsp. tularensis FSC 198, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_008369:221382*22138225459933218Francisella tularensis subsp. holarctica OSU18, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_009662:222964*22296426489641933Nitratiruptor sp. SB155-2, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_009749:221311*22131125459933289Francisella tularensis subsp. holarctica FTA, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_010677:1621500*1621500165903737538Francisella tularensis subsp. mediasiatica FSC147, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_019978:178277*17827721455436278Halobacteroides halobius DSM 5150, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_006833:409599*40959944663937041Wolbachia endosymbiont strain TRS of Brugia malayi, complete9e-1383.8BLASTN svgBLASTP svg
NC_014759:3572500*3572500360200929510Marivirga tractuosa DSM 4126 chromosome, complete genome4e-1281.8BLASTN svgBLASTP svg
NC_020299:764526*76452681749952974Candidatus Kinetoplastibacterium oncopeltii TCC290E, complete1e-1179.8BLASTN svgBLASTP svg
NC_011026:1284966*1284966131731132346Chloroherpeton thalassium ATCC 35110, complete genome6e-1177.8BLASTN svgBLASTP svg
NC_008601:246583*24658327938032798Francisella tularensis subsp. novicida U112, complete genome6e-1177.8BLASTN svgBLASTP svg
NC_002939:3108907*3108907314227133365Geobacter sulfurreducens PCA, complete genome6e-1177.8BLASTN svgBLASTP svg
NC_005303:272915*27291531815445240Onion yellows phytoplasma OY-M, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_009465:171000*17100019666925670Candidatus Vesicomyosocius okutanii HA, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_014117:2684631*2684631271225727627Burkholderia sp. CCGE1002 chromosome chromosome 1, complete2e-1075.8BLASTN svgBLASTP svg
NC_014934:701085*70108572182720743Cellulophaga algicola DSM 14237 chromosome, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_015846:493388*49338851845425067Capnocytophaga canimorsus Cc5 chromosome, complete genome2e-1075.8BLASTN svgBLASTP svg
NS_000191:120700*12070014754826849Uncultured Termite group 1 bacterium phylotype Rs-D17, complete2e-1075.8BLASTN svgBLASTP svg
NC_020195:234392*23439225309918708Blattabacterium sp. (Blatta orientalis) str. Tarazona, complete2e-1075.8BLASTN svgBLASTP svg
NC_006831:250074*25007428496034887Ehrlichia ruminantium str. Gardel, complete genome9e-1073.8BLASTN svgBLASTP svg
NC_006832:252952*25295228640633455Ehrlichia ruminantium str. Welgevonden, complete genome9e-1073.8BLASTN svgBLASTP svg
NC_010516:3759136*3759136379956240427Clostridium botulinum B1 str. Okra, complete genome9e-1073.8BLASTN svgBLASTP svg
NC_010520:3788702*3788702382916340462Clostridium botulinum A3 str. Loch Maree, complete genome9e-1073.8BLASTN svgBLASTP svg
NC_012563:3956500*3956500399649139992Clostridium botulinum A2 str. Kyoto, complete genome9e-1073.8BLASTN svgBLASTP svg
NC_015945:708968*70896873426525298Muricauda ruestringensis DSM 13258 chromosome, complete genome9e-1073.8BLASTN svgBLASTP svg
NC_005295:272708*27270830641333706Ehrlichia ruminantium str. Welgevonden, complete genome9e-1073.8BLASTN svgBLASTP svg
NC_003030:3251941*3251941329013838198Clostridium acetobutylicum ATCC 824, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_003454:63500*6350010726843769Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete3e-0971.9BLASTN svgBLASTP svg
NC_008819:1531187*1531187156050329317Prochlorococcus marinus str. NATL1A, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_011899:124500*12450014268218183Halothermothrix orenii H 168, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_015167:2415604*2415604244614330540Cellulophaga lytica DSM 7489 chromosome, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_015687:3252233*3252233329176539533Clostridium acetobutylicum DSM 1731 chromosome, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_004193:119737*11973716514845412Oceanobacillus iheyensis HTE831, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_007205:1059684*1059684108783428151Candidatus Pelagibacter ubique HTCC1062, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_011047:443475*44347548738743913Candidatus Phytoplasma mali, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_014166:2621500*2621500264777326274Arcobacter nitrofigilis DSM 7299 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_014248:1072473*1072473109780725335Nostoc azollae 0708 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_014738:1507641*1507641153018722547Riemerella anatipestifer ATCC 11845 = DSM 15868 chromosome,1e-0869.9BLASTN svgBLASTP svg
NC_007413:1570000*1570000159209922100Anabaena variabilis ATCC 29413, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_009828:469778*46977851143441657Thermotoga lettingae TMO, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_015318:1336282*1336282137604139760Hippea maritima DSM 10411 chromosome, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_015520:2280643*2280643230563624994Mahella australiensis 50-1 BON chromosome, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_015696:220798*22079825652935732Francisella sp. TX077308 chromosome, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_018664:2357882*2357882238773229851Clostridium acidurici 9a chromosome, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_002488:2502000*2502000252409922100Xylella fastidiosa 9a5c, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_005364:17709117709119836621276Mycoplasma mycoides subsp. mycoides SC str. PG1, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_008639:2786447*2786447282649740051Chlorobium phaeobacteroides DSM 266, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_009465:766893*76689380098034088Candidatus Vesicomyosocius okutanii HA, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_009850:1862602*1862602190488342282Arcobacter butzleri RM4018, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_011653:1226035*1226035125859932565Thermosipho africanus TCF52B, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_013199:2536705*2536705255640419700Lactobacillus rhamnosus Lc 705, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_014393:4482896*4482896452909946204Clostridium cellulovorans 743B chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_020291:166500*16650019679930300Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genome2e-0765.9BLASTN svgBLASTP svg
NC_018643:673195*67319570659933405Alpha proteobacterium HIMB5 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_015731:2950874*2950874299427243399Nitrosomonas sp. Is79A3 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_015499:491423*49142351900327581Thermodesulfobium narugense DSM 14796 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_015380:1066911*1066911109186024950Candidatus Pelagibacter sp. IMCC9063 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_011661:998562*998562101885320292Dictyoglomus turgidum DSM 6724, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_010644:1491357*1491357151489223536Elusimicrobium minutum Pei191, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_009840:1485383*1485383156280577423Prochlorococcus marinus str. MIT 9215, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_008816:1416711*1416711145515438444Prochlorococcus marinus str. AS9601, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_007716:467235*46723550266435430Aster yellows witches'-broom phytoplasma AYWB, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_007335:944175*94417597349129317Prochlorococcus marinus str. NATL2A, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_003272:5184000*5184000520609922100Nostoc sp. PCC 7120, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_002162:643446*64344666409620651Ureaplasma parvum serovar 3 str. ATCC 700970, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_012225:2421783*2421783245309931317Brachyspira hyodysenteriae WA1, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_013418:397956*39795641944221487Blattabacterium sp. (Periplaneta americana) str. BPLAN, complete8e-0763.9BLASTN svgBLASTP svg
NC_014330:1113145*1113145114959936455Brachyspira pilosicoli 95/1000 chromosome, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_019908:2068631*2068631210767339043Brachyspira pilosicoli P43/6/78 chromosome, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_019814:125611*12561117345647846Candidatus Kinetoplastibacterium blastocrithidii (ex Strigomonas8e-0763.9BLASTN svgBLASTP svg
NC_018677:73254*7325410559932346Candidatus Portiera aleyrodidarum BT-B-HRs chromosome, complete8e-0763.9BLASTN svgBLASTP svg
NC_018604:2579000*2579000263363754638Brachyspira pilosicoli WesB complete genome8e-0763.9BLASTN svgBLASTP svg
NC_018607:290500*29050033195841459Brachyspira pilosicoli B2904 chromosome, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_018507:79686*7968611259932914Candidatus Portiera aleyrodidarum BT-B chromosome, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_015731:867377*86737792057653200Nitrosomonas sp. Is79A3 chromosome, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_015516:1801500*1801500182053219033Melissococcus plutonius ATCC 35311, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_007799:968499*96849998704218544Ehrlichia chaffeensis str. Arkansas, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_008528:1265542*1265542129322127680Oenococcus oeni PSU-1, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_010003:795355*79535584173746383Petrotoga mobilis SJ95, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_011726:1605600*1605600162524019641Cyanothece sp. PCC 8801, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_013592:32128343212834324883336000Dickeya dadantii Ech586, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_014220:2265882*2265882228598020099Syntrophothermus lipocalidus DSM 12680 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_014315:2346927*2346927237964732721Nitrosococcus watsoni C-113 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_015185:174847*17484719343818592Desulfurobacterium thermolithotrophum DSM 11699 chromosome,3e-0661.9BLASTN svgBLASTP svg
NC_015496:2079156*2079156209909919944Krokinobacter diaphorus 4H-3-7-5 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_015601:1229909*1229909125272022812Erysipelothrix rhusiopathiae str. Fujisawa, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_015714:238891*23889125832919439Treponema paraluiscuniculi Cuniculi A chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_007484:2665195*2665195268309917905Nitrosococcus oceani ATCC 19707, complete genome3e-0661.9BLASTN svgBLASTP svg