Pre_GI: BLASTN Hits

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Query: NC_009439:637193 Pseudomonas mendocina ymp, complete genome

Start: 637193, End: 660762, Length: 23570

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_015410:70994770994773208122135Pseudomonas mendocina NK-01 chromosome, complete genome04423BLASTN svgBLASTP svg
NC_015556:45433804543380456955726178Pseudomonas fulva 12-X chromosome, complete genome02026BLASTN svgBLASTP svg
NC_015740:40724154072415409719824784Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete01949BLASTN svgBLASTP svg
NC_009434:41403624140362416039720036Pseudomonas stutzeri A1501, complete genome01748BLASTN svgBLASTP svg
NC_007947:79745679745682317625721Methylobacillus flagellatus KT, complete genome1e-88335BLASTN svgBLASTP svg
NC_014318:86874488687448870659919152Amycolatopsis mediterranei U32 chromosome, complete genome3e-24121BLASTN svgBLASTP svg
NC_003902:2469500*2469500250580636307Xanthomonas campestris pv. campestris str. ATCC 33913, complete8e-19103BLASTN svgBLASTP svg
NC_015138:2025000*2025000204785422855Acidovorax avenae subsp. avenae ATCC 19860 chromosome, complete1e-1799.6BLASTN svgBLASTP svg
NC_003919:2435058*2435058245860723550Xanthomonas axonopodis pv. citri str. 306, complete genome5e-1797.6BLASTN svgBLASTP svg
NC_008463:1912348*1912348195418241835Pseudomonas aeruginosa UCBPP-PA14, complete genome5e-1797.6BLASTN svgBLASTP svg
NC_013889:32511832511834919724080Thioalkalivibrio sp. K90mix chromosome, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_012791:2832001*2832001286519533195Variovorax paradoxus S110 chromosome 1, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_014366:1814000*1814000183684822849Gamma proteobacterium HdN1, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_015563:3786192*3786192382040734216Delftia sp. Cs1-4 chromosome, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_014168:1724993*1724993175913834146Segniliparus rotundus DSM 44985 chromosome, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_014221:68753768753771209924563Truepera radiovictrix DSM 17093 chromosome, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_005085:659378*65937868456625189Chromobacterium violaceum ATCC 12472, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_002932:22166122166124321221552Chlorobium tepidum TLS, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_009800:3821824*3821824384534923526Escherichia coli HS, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_011027:19715801971580201060939030Chlorobaculum parvum NCIB 8327, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_019960:1658657*1658657174985291196Prevotella dentalis DSM 3688 chromosome 1, complete sequence7e-0763.9BLASTN svgBLASTP svg
NC_007946:4050762*4050762407361822857Escherichia coli UTI89, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_007613:3637832*3637832366214824317Shigella boydii Sb227, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_007606:3784847*3784847380859923753Shigella dysenteriae Sd197, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_007384:3956465*3956465398127224808Shigella sonnei Ss046, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_004431:4223232*4223232424609922868Escherichia coli CFT073, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_003305:17439391743939177259928661Agrobacterium tumefaciens str. C58 chromosome linear, complete3e-0661.9BLASTN svgBLASTP svg
NC_002695:4537000*4537000455962722628Escherichia coli O157:H7 str. Sakai, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_002655:4606000*4606000462939223393Escherichia coli O157:H7 EDL933, complete genome3e-0661.9BLASTN svgBLASTP svg
CU928160:3862935*3862935388577322839Escherichia coli IAI1 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
CU928145:4167043*4167043419159624554Escherichia coli 55989 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
AP010958:4668181*4668181469259924419Escherichia coli O103:H2 str. 12009 DNA, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_008253:3896704*3896704392023823535Escherichia coli 536, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_008340:2614000*2614000263940025401Alkalilimnicola ehrlichei MLHE-1, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_003063:30496230496233428329322Agrobacterium tumefaciens str. C58 chromosome linear, complete3e-0661.9BLASTN svgBLASTP svg
NC_011751:4251296*4251296427504623751Escherichia coli UMN026 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_011750:4307166*4307166433102623861Escherichia coli IAI39 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_011748:4167043*4167043419159624554Escherichia coli 55989, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_010658:3774110*3774110379937225263Shigella boydii CDC 3083-94, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_010498:4031500*4031500405311121612Escherichia coli SMS-3-5, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_010468:80000*8000010593725938Escherichia coli ATCC 8739, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_009801:4108179*4108179413170423526Escherichia coli E24377A, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_008782:18638531863853188890825056Acidovorax sp. JS42, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_008563:40835584083558410710723550Escherichia coli APEC O1, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_019940:39155003915500393629220793Thioflavicoccus mobilis 8321 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg