Query: NC_008593:609723 Clostridium novyi NT, complete genome
Start: 609723, End: 632911, Length: 23189
Host Lineage: Clostridium novyi; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria
General Information: This strain (NT) was created so that it lacks the lethal toxin. Injection of spores of this organism into mice harboring tumors resulted in an increased immune response and destruction of the tumor tissue in a method known as COBALT (combination bacteriolytic therapy) when the spores along with chemotherapeutic agents or radiation are co-administered. The anaerobic bacteria preferentially target hypoxic cancer tissue and stimulate immune responses to that tissue. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. Clostridium novyi is an anaerobic bacterium found in soil, aquatic sediments, and intestinal tract of both animals and humans. Some types produce lethal toxins.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_008593:2457594* | 2457594 | 2504710 | 47117 | Clostridium novyi NT, complete genome | 0 | 3033 | BLASTN svg | BLASTP svg |
NC_008593:555463* | 555463 | 579391 | 23929 | Clostridium novyi NT, complete genome | 0 | 3001 | BLASTN svg | BLASTP svg |
NC_008593:1513107 | 1513107 | 1536824 | 23718 | Clostridium novyi NT, complete genome | 0 | 2987 | BLASTN svg | BLASTP svg |
NC_008593:1917118* | 1917118 | 1965286 | 48169 | Clostridium novyi NT, complete genome | 0 | 2970 | BLASTN svg | BLASTP svg |
NC_008593:37456* | 37456 | 60806 | 23351 | Clostridium novyi NT, complete genome | 0 | 2791 | BLASTN svg | BLASTP svg |
NC_010674:3049500 | 3049500 | 3070693 | 21194 | Clostridium botulinum B str. Eklund 17B, complete genome | 1e-116 | 428 | BLASTN svg | BLASTP svg |
NC_010723:2873886 | 2873886 | 2894376 | 20491 | Clostridium botulinum E3 str. Alaska E43, complete genome | 3e-114 | 420 | BLASTN svg | BLASTP svg |
NC_008262:784878* | 784878 | 829910 | 45033 | Clostridium perfringens SM101, complete genome | 2e-84 | 321 | BLASTN svg | BLASTP svg |
NC_008261:817295 | 817295 | 842097 | 24803 | Clostridium perfringens ATCC 13124, complete genome | 4e-82 | 313 | BLASTN svg | BLASTP svg |
NC_020291:1810527 | 1810527 | 1829405 | 18879 | Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genome | 6e-66 | 260 | BLASTN svg | BLASTP svg |
NC_013454:229587* | 229587 | 254134 | 24548 | Blattabacterium sp. (Blattella germanica) str. Bge, complete | 2e-16 | 95.6 | BLASTN svg | BLASTP svg |
NC_009850:2169459* | 2169459 | 2203202 | 33744 | Arcobacter butzleri RM4018, complete genome | 5e-14 | 87.7 | BLASTN svg | BLASTP svg |
NC_014499:87528* | 87528 | 109050 | 21523 | Candidatus Sulcia muelleri CARI chromosome, complete genome | 2e-10 | 75.8 | BLASTN svg | BLASTP svg |
NC_020195:234392* | 234392 | 253099 | 18708 | Blattabacterium sp. (Blatta orientalis) str. Tarazona, complete | 7e-10 | 73.8 | BLASTN svg | BLASTP svg |
NC_014751:449001* | 449001 | 468056 | 19056 | Mycoplasma leachii PG50 chromosome, complete genome | 7e-10 | 73.8 | BLASTN svg | BLASTP svg |
NC_013123:78786* | 78786 | 105520 | 26735 | Candidatus Sulcia muelleri SMDSEM, complete genome | 3e-09 | 71.9 | BLASTN svg | BLASTP svg |
NC_014004:66631* | 66631 | 88706 | 22076 | Candidatus Sulcia muelleri DMIN chromosome, complete genome | 4e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_007633:446899* | 446899 | 465954 | 19056 | Mycoplasma capricolum subsp. capricolum ATCC 27343, complete | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_003454:292942 | 292942 | 311797 | 18856 | Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |