Pre_GI: BLASTN Hits

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Query: NC_008593:609723 Clostridium novyi NT, complete genome

Start: 609723, End: 632911, Length: 23189

Host Lineage: Clostridium novyi; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain (NT) was created so that it lacks the lethal toxin. Injection of spores of this organism into mice harboring tumors resulted in an increased immune response and destruction of the tumor tissue in a method known as COBALT (combination bacteriolytic therapy) when the spores along with chemotherapeutic agents or radiation are co-administered. The anaerobic bacteria preferentially target hypoxic cancer tissue and stimulate immune responses to that tissue. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. Clostridium novyi is an anaerobic bacterium found in soil, aquatic sediments, and intestinal tract of both animals and humans. Some types produce lethal toxins.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_008593:2457594*2457594250471047117Clostridium novyi NT, complete genome03033BLASTN svgBLASTP svg
NC_008593:555463*55546357939123929Clostridium novyi NT, complete genome03001BLASTN svgBLASTP svg
NC_008593:15131071513107153682423718Clostridium novyi NT, complete genome02987BLASTN svgBLASTP svg
NC_008593:1917118*1917118196528648169Clostridium novyi NT, complete genome02970BLASTN svgBLASTP svg
NC_008593:37456*374566080623351Clostridium novyi NT, complete genome02791BLASTN svgBLASTP svg
NC_010674:30495003049500307069321194Clostridium botulinum B str. Eklund 17B, complete genome1e-116428BLASTN svgBLASTP svg
NC_010723:28738862873886289437620491Clostridium botulinum E3 str. Alaska E43, complete genome3e-114420BLASTN svgBLASTP svg
NC_008262:784878*78487882991045033Clostridium perfringens SM101, complete genome2e-84321BLASTN svgBLASTP svg
NC_008261:81729581729584209724803Clostridium perfringens ATCC 13124, complete genome4e-82313BLASTN svgBLASTP svg
NC_020291:18105271810527182940518879Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genome6e-66260BLASTN svgBLASTP svg
NC_013454:229587*22958725413424548Blattabacterium sp. (Blattella germanica) str. Bge, complete2e-1695.6BLASTN svgBLASTP svg
NC_009850:2169459*2169459220320233744Arcobacter butzleri RM4018, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_014499:87528*8752810905021523Candidatus Sulcia muelleri CARI chromosome, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_020195:234392*23439225309918708Blattabacterium sp. (Blatta orientalis) str. Tarazona, complete7e-1073.8BLASTN svgBLASTP svg
NC_014751:449001*44900146805619056Mycoplasma leachii PG50 chromosome, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_013123:78786*7878610552026735Candidatus Sulcia muelleri SMDSEM, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_014004:66631*666318870622076Candidatus Sulcia muelleri DMIN chromosome, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_007633:446899*44689946595419056Mycoplasma capricolum subsp. capricolum ATCC 27343, complete2e-0765.9BLASTN svgBLASTP svg
NC_003454:29294229294231179718856Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete3e-0661.9BLASTN svgBLASTP svg